e10vk
 
    UNITED
    STATES SECURITIES AND EXCHANGE COMMISSION
    Washington, D.C.
    20549
 
    Form 10-K
 
    |  |  |  | 
| 
    þ
 |  | ANNUAL REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
 | 
|  |  | For the fiscal year ended
    December 31, 2008 | 
| 
    OR
 | 
| 
    o
 |  | TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
 | 
|  |  | For the transition period
    from          to | 
 
    Commission File Number:
    001-32335
    Halozyme Therapeutics,
    Inc.
    (Exact name of registrant as
    specified in its charter)
 
    |  |  |  | 
| Delaware (State or other jurisdiction
    of
 incorporation or organization)
 |  | 88-0488686 (I.R.S. Employer
 Identification No.)
 | 
|  |  |  | 
| 11388 Sorrento Valley Road, San Diego, California
 (Address of principal
    executive offices)
 |  | 92121 (Zip
    Code)
 | 
 
    (858)
    794-8889
    (Registrants telephone
    number, including area code)
 
    Securities registered under Section 12(b) of the Act:
    None
 
    Securities registered under Section 12(g) of the Act:
    Common Stock, Par Value $.001
    (Title of Class)
 
    Indicate by check mark if the registrant is a well-known
    seasoned issuer, as defined in Rule 405 of the Securities
    Act.  Yes o     No þ
    
 
    Indicate by check mark if the registrant is not required to file
    reports pursuant to Section 13 or 15(d) of the
    Act.  Yes o     No þ
    
 
    Indicate by check mark whether the registrant (1) has filed
    all reports required to be filed by Section 13 or 15(d) of
    the Securities Exchange Act of 1934 during the preceding
    12 months (or for such shorter period that the registrant
    was required to file such reports), and (2) has been
    subject to such filing requirements for the past
    90 days.  Yes þ     No o
    
 
    Indicate by check mark if disclosure of delinquent filers
    pursuant to Item 405 of
    Regulation S-K
    is not contained herein, and will not be contained, to the best
    of registrants knowledge, in definitive proxy or
    information statements incorporated by reference in
    Part III of this
    Form 10-K
    or any amendment to this
    Form 10-K.  þ
    
 
    Indicate by check mark whether the registrant is a large
    accelerated filer, an accelerated filer, a non-accelerated filer
    or a smaller reporting company. See the definitions of
    large accelerated filer, accelerated
    filer and smaller reporting company in
    Rule 12b-2
    of the Exchange Act. (Check one):
 
    |  |  |  |  |  |  |  | 
| 
    Large accelerated
    filer o
    
 |  | Accelerated
    filer þ |  | Non-accelerated
    filer o |  | Smaller reporting
    company o | 
|  |  |  |  | (Do not check if a smaller reporting company) |  |  | 
 
    Indicate by check mark whether the registrant is a shell company
    (as defined in
    Rule 12b-2
    of the Exchange
    Act).  Yes o     No þ
    
 
    The aggregate market value of the voting and non-voting common
    equity held by non-affiliates of the registrant as of
    June 30, 2008 was approximately $323.2 million based
    on the closing price on the NASDAQ Stock Market reported for
    such date. Shares of common stock held by each officer and
    director and by each person who is known to own 10% or more of
    the outstanding common stock have been excluded in that such
    persons may be deemed to be affiliates of the registrant. This
    determination of affiliate status is not necessarily a
    conclusive determination for other purposes.
 
    As of February 27, 2009, there were 82,946,449 shares
    of the registrants $0.001 par value common stock
    issued and outstanding.
 
    DOCUMENTS
    INCORPORATED BY REFERENCE
 
    Portions of the issuers Definitive Proxy Statement to be
    filed with the Securities and Exchange Commission pursuant to
    Regulation 14A in connection with the registrants
    2009 Annual Meeting of Stockholders, to be filed subsequent to
    the date hereof, are incorporated by reference into
    Parts II and III of this Annual Report. Such
    Definitive Proxy Statement will be filed with the Securities and
    Exchange Commission not later than 120 days after the
    conclusion of the issuers fiscal year ended
    December 31, 2008.
 
 
 
 
    PART I
 
 
    This Annual Report on
    Form 10-K
    contains forward-looking statements regarding our business,
    financial condition, results of operations and prospects. Words
    such as expects, anticipates,
    intends, plans, believes,
    seeks, estimates, thinks,
    may, could, will,
    would, should, continue,
    potential, likely,
    opportunity and similar expressions or variations of
    such words are intended to identify forward-looking statements,
    but are not the exclusive means of identifying forward-looking
    statements in this Annual Report. Additionally, statements
    concerning future matters such as the development or regulatory
    approval of new products, enhancements of existing products or
    technologies, third party performance under key collaboration
    agreements, revenue and expense levels and other statements
    regarding matters that are not historical are forward-looking
    statements.
 
    Although forward-looking statements in this Annual Report
    reflect the good faith judgment of our management, such
    statements can only be based on facts and factors currently
    known by us. Consequently, forward-looking statements are
    inherently subject to risks and uncertainties and actual results
    and outcomes may differ materially from the results and outcomes
    discussed in or anticipated by the forward-looking statements.
    Factors that could cause or contribute to such differences in
    results and outcomes include without limitation those discussed
    under the heading Risk Factors below, as well as
    those discussed elsewhere in this Annual Report. Readers are
    urged not to place undue reliance on these forward-looking
    statements, which speak only as of the date of this Annual
    Report. We undertake no obligation to revise or update any
    forward-looking statements in order to reflect any event or
    circumstance that may arise after the date of this Annual
    Report. Readers are urged to carefully review and consider the
    various disclosures made in this Annual Report, which attempt to
    advise interested parties of the risks and factors that may
    affect our business, financial condition, results of operations
    and prospects.
 
    Overview
 
    We are a biopharmaceutical company dedicated to the development
    and commercialization of products targeting the extracellular
    matrix, or Matrix, for the endocrinology, oncology, dermatology
    and drug delivery markets. Our existing products and our
    products under development are based primarily on intellectual
    property covering the family of human enzymes known as
    hyaluronidases.
 
    Our operations to date have been limited to organizing and
    staffing our operating subsidiary, Halozyme, Inc., acquiring,
    developing and securing our technology and undertaking product
    development for our existing products and product candidates.
    Over the last year, we increased our focus on our proprietary
    product pipeline and expanded investments in our proprietary
    product candidates. Our key partnerships are with F.
    Hoffmann-La Roche, Ltd and Hoffmann-La Roche, Inc., or
    Roche, to apply
    Enhanzetm
    Technology to Roches biological therapeutic compounds for
    up to thirteen targets and with Baxter Healthcare Corporation,
    or Baxter, to apply Enhanze Technology to Baxters
    biological therapeutic compound, GAMMAGARD
    LIQUIDtm.
    We have two marketed products: HYLENEX, a registered trademark
    of Baxter International, Inc., a product used as an adjuvant to
    increase the absorption and dispersion of other injected drugs
    and fluids, and
    Cumulase®,
    a product used for in vitro fertilization, or IVF.
    Currently, we have only limited revenue from the sales of
    HYLENEX and Cumulase, in addition to revenues from our
    partnerships with Baxter and Roche.
 
    We have product candidates in the research, preclinical and
    clinical stages, but future revenues from the sales of products
    will depend on our ability to develop, manufacture, obtain
    regulatory approvals for and successfully commercialize product
    candidates. It may be years, if ever, before we are able to
    obtain regulatory approvals for these product candidates. We
    have incurred net operating losses each year since inception,
    with an accumulated deficit of approximately $113.6 million
    as of December 31, 2008.
 
    We currently have an effective universal shelf registration
    statement which allows us to offer and sell up to
    $50.0 million of equity or debt securities and we may
    utilize this universal shelf in the future to raise capital to
    fund the continued development of our product candidates, the
    commercialization of our products or for other general corporate
    purposes.
    
    1
 
    We reincorporated from the State of Nevada to the State of
    Delaware in November 2007. Our principal offices and research
    facilities are located at 11388 Sorrento Valley Road,
    San Diego, California 92121. Our telephone number is
    (858) 794-8889
    and our
    e-mail
    address is info@halozyme.com. Additional information about the
    Company can be found on our website at www.halozyme.com, and in
    our periodic and current reports filed with the Securities and
    Exchange Commission, or SEC. Copies of our current and periodic
    reports filed with the SEC are available at the SEC Public
    Reference Room at 450 Fifth Street, N.W.,
    Washington, D.C. 20549, and online at www.sec.gov and our
    website at www.halozyme.com.
 
    Technology
 
    Our technology is based on our proprietary recombinant human
    PH20 enzyme, or rHuPH20, a human synthetic version of
    hyaluronidase. Hyaluronidases are enzymes (proteins) that break
    down hyaluronan, or HA, which is a naturally occurring
    space-filling, gel-like substance that is a major component of
    tissues throughout the body, such as skin and bone. The PH20
    enzyme is a naturally occurring enzyme that digests HA to
    temporarily break down the gel, thereby facilitating the
    penetration and diffusion of other drugs and fluids that are
    injected under the skin or in the muscle. Our proprietary
    technology is applicable to multiple therapeutic areas and may
    be used to both expand existing markets and create new ones. Our
    technology may be utilized for the development of our own
    proprietary products. For example, we are developing a PEGylated
    version of our rHuPH20 enzyme, or PEGPH20, that is being tested
    as a single agent oncology therapy. The PH20 enzyme may also be
    applied to existing and developmental products of third parties
    through key partnerships.
 
    Strategy
 
    We are a biopharmaceutical company dedicated to the development
    and commercialization of products targeting the Matrix for the
    endocrinology, oncology, dermatology and drug delivery markets.
    The Matrix is a key structural component found in both normal
    tissues such as skin and bone, and abnormal tissues such as
    tumors. By expanding upon our scientific expertise in the
    Matrix, we hope to develop therapeutic and aesthetic drugs. Our
    lead enzyme, rHuPH20 hyaluronidase, is an example of a
    Matrix-modifying enzyme. By degrading HA, a key Matrix component
    in the skin, rHuPH20 facilitates the delivery of drugs and
    fluids through the Matrix and into circulation. While rHuPH20 is
    the underlying drug delivery technology of both HYLENEX for
    generic small molecules and fluids, and Enhanze Technology for
    proprietary small and large molecules, we are seeking ways to
    combine or co-formulate rHuPH20 with previously approved small
    molecule drugs to develop new proprietary products, with
    potentially new patent protection. Other benefits include
    patient convenience.
 
    We are also expanding our scientific work in the Matrix by
    developing other enzymes and agents that target unique aspects
    of the Matrix, giving rise to potential new molecular entities
    targeting indications in endocrinology, oncology and
    dermatology. For instance, we are developing a formulation of
    rHuPH20 and insulin for the treatment of diabetes mellitus. We
    are also developing a PEGPH20 enzyme that lasts longer in the
    bloodstream, and may therefore better target solid tumors by
    clearing away the surrounding HA and reducing the interstitial
    fluid pressure within malignant tumors to allow better
    penetration by chemotherapeutic agents. In addition, we are
    developing a Matrix-modifying enzyme that targets components of
    the skin and subcutaneous tissues that may have both therapeutic
    and aesthetic applications within dermatology. Key aspects of
    our corporate strategy include the following:
 
    |  |  |  | 
    |  |  | Develop our own proprietary products based on our PH20 enzyme
    and other new molecular entities; | 
|  | 
    |  |  | Seek partnerships for our Enhanze Technology drug delivery
    platform; | 
|  | 
    |  |  | Support product development and commercialization under our
    Roche Enhanze Technology collaboration; | 
|  | 
    |  |  | Support product development and commercialization under our
    Baxter Bioscience Enhanze Technology collaboration; and | 
|  | 
    |  |  | Support Baxters commercialization of HYLENEX. | 
    
    2
 
 
    Products
    and Product Candidates
 
    There are two marketed products that utilize our technology and
    there are multiple product candidates targeting several
    indications in various stages of development. The following
    table summarizes the proprietary and partnered products and
    product candidates that utilize our technology:
 
 
    Insulin-PH20
 
    One of our proprietary programs focuses on the formulation of
    our lead enzyme rHuPH20 and insulin for the treatment of
    diabetes mellitus. Diabetes mellitus is an increasingly
    prevalent, costly condition associated with substantial
    morbidity and mortality. Attaining and maintaining normal blood
    sugar levels to minimize the long-term clinical risks is a key
    treatment goal for diabetic patients. Combining rHuPH20 with
    insulin may facilitate faster insulin spreading from the
    subcutaneous space into the vascular compartment leading to
    faster insulin response and improved glycemic control
    potentially resulting in fewer hypoglycemic episodes. By making
    mealtime insulin faster, i.e., shifting insulin exposure and
    glucose lowering activity to earlier times and away from late
    postprandial times, combination with rHuPH20 may yield a profile
    of insulin kinetics and activity more like that of natural,
    endogenous prandial insulin release.
 
    In November 2008, we started a Phase II clinical trial of
    rHuPH20 formulations with
    Humulin®
    R (regular insulin) and
    Humalog®
    (insulin lispro) in Type 1 diabetic patients. This exploratory,
    crossover design, single blind, open label, liquid meal
    Phase II study is designed to collect data on at least
    20 patients who complete the study. The study allows for
    insulin dose titration and each patient will receive a minimum
    of four and up to three additional study drug injections that
    include Humulin R and Humalog with and without rHuPH20.
    
    3
 
    The primary endpoint of this study, a pharmacokinetic measure,
    is the area under the curve for plasma insulin concentration
    from zero to 60 minutes after injection. Secondary endpoints
    include additional pharmacokinetic data, as well as blood
    glucose concentration at various time points. Safety data such
    as adverse reactions, hypoglycemia, blood chemistry and
    injection site tolerability will be collected, measured and
    evaluated. Patients may be on study for up to an estimated
    14 weeks from screening to completion and the results
    should be available for presentation at a medical or scientific
    forum in mid-2009.
 
    In June 2008, we announced data from our Phase I clinical trial
    showing that combining rHuPH20 with Humulin R or Humalog yielded
    pharmacokinetics and glucodynamics that better mimicked
    physiologic prandial (mealtime) insulin release and activity
    than either Humulin R or Humalog alone. The Phase I crossover,
    euglycemic clamp study was conducted in 26 healthy male
    volunteers. The study had two stages: the first stage compared
    the pharmacokinetics and glucodynamics of Humalog injected
    subcutaneously with and without rHuPH20, and the second stage
    compared the pharmacokinetics and glucodynamics of Humulin R
    injected subcutaneously with and without rHuPH20.
 
    Key pharmacokinetic and glucodynamic improvements observed in
    the study included:
 
    |  |  |  | 
    |  |  | Significantly faster systemic absorption of each insulin,
    starting with the first observation time point of three minutes
    after injection | 
|  | 
    |  |  | Significantly faster and greater glucose lowering activity early
    after injection | 
|  | 
    |  |  | Significantly greater peak insulin levels for the same dose
    administered | 
|  | 
    |  |  | Significantly lower variability of key pharmacokinetic and
    glucodynamic variables across subjects | 
|  | 
    |  |  | rHuPH20 in combination with Humulin demonstrated statistically
    significant improvement across all parameters when compared to
    Humalog alone | 
 
    Bisphosphonate-PH20
 
    Bisphosphonates are a class of molecules that bind to
    mineralized bone matrix and inhibit bone resorption. Currently,
    there are both oral and intravenous bisphosphonates available
    commercially. Oral bisphosphonates often cause gastrointestinal
    side effects and require a cumbersome dosing regimen. The
    gastrointestinal side effects of oral bisphosphonates may lead
    to patient non-compliance to prescribed therapy. Certain
    bisphosphonates are indicated for the treatment of osteoporosis
    and skeletal metastases, but can only be administered today by
    intravenous infusion. As such, patients often have to travel to
    an infusion center or see a specialist to receive their
    intravenous bisphosphonate infusion. Subcutaneous injections of
    bisphosphonates are not considered feasible due to injection
    site reactions in the skin
    and/or
    impractical injection volumes.
 
    The goal of our bisphosphonate program is to provide an
    alternative dosage formulation that may offer greater
    convenience, compliance and tolerability to patients for the
    treatment of osteoporosis. If rHuPH20 hyaluronidase can rapidly
    disperse, dilute and facilitate the systemic absorption of
    subcutaneous bisphosphonates, it may prevent local irritation
    and provide a more convenient route of administration. We
    completed studies in animal models to investigate whether
    increasing the dispersion and absorption of bisphosphonates in
    the skin and subcutaneous tissues with rHuPH20 could modify
    injection site reaction profiles from two intravenous
    bisphosphonate formulations, zoledronic acid and ibandronate.
    The pharmacokinetics of bisphosphonates in blood were also
    examined and compared to intravenous infusion. Key findings from
    the studies were as follows:
 
    |  |  |  | 
    |  |  | In rodent intradermal models, injection of bisphosphonates
    without rHuPH20 created injection site reactions characterized
    by erythema, induration and ulceration in a concentration
    dependent manner. | 
|  | 
    |  |  | In rodent intradermal models, the maximal concentration of
    bisphosphonates that could be administered without producing
    injection site reactions was increased 3- to 5-fold when
    co-administered in combination with rHuPH20. | 
|  | 
    |  |  | In porcine pharmacokinetic models, absolute bioavailability by
    subcutaneous injection with rHuPH20 was comparable to IV
    infusion. | 
    
    4
 
 
    In the fourth quarter of 2008, we initiated a Phase I clinical
    trial for a bisphosphonate administered with rHuPH20 as a
    subcutaneous injection. This study will explore the safety,
    tolerability and pharmacokinetics of subcutaneous administration
    of a bisphosphonate plus rHuPH20.
 
    PEGPH20
 
    We are investigating our PEGPH20 enzyme as a candidate for the
    systemic treatment of tumors with high levels of HA. PEGylation
    refers to the attachment of polyethyleneglycol to our rHuPH20
    enzyme, which extends its half life in the blood from less than
    30 seconds to more than 24 hours. HA is a component of the
    Matrix that frequently accumulates in human cancers. The
    quantity of HA produced by the tumor cells correlates with
    increased tumor growth and metastasis and has been linked with
    tumor progression and poor prognosis in some studies. In animal
    studies, the removal of HA from tumors with hyaluronidase has
    demonstrated reduction of tumor growth, and in some experiments,
    enhanced efficacy of certain anti-cancer drugs. Increased
    sensitivity to chemotherapeutic agents may be achieved once the
    HA has been removed.
 
    Numerous solid tumors, including prostate, breast, pancreas and
    colon, accumulate HA that forms a halo-like coating over the
    surface of the tumor cell. In preclinical studies, PEGPH20 has
    been shown to remove the HA coating surrounding several
    tumor cell lines. Treatment of PC3 (a prostate cancer cell line
    that produces HA) tumor bearing mice with PEGPH20 as a single
    agent demonstrated a slowing of tumor growth relative to
    controls. Repeat dosing with PEGPH20 produced a sustained
    depletion of HA in the tumor microenvironment. For tumor models
    that did not produce HA, the presence of PEGPH20 had no effect.
 
    We performed certain preclinical studies to determine whether
    HA-dependent pericellular matrices produced in vitro
    and in vivo by a hormone-refractory prostate cancer
    cell line could be enzymatically depleted in prostate carcinoma
    xenografts following intravenous administration of the PEGPH20
    enzyme. The dose-dependent effects of systemic enzyme treatment
    were evaluated by a combination of direct micropressure
    measurements, magnetic resonance imaging, or MRI, ultrasound,
    immunohistochemistry and determination of tumor water content.
    The studies explored the physiologic responses to enzymatic
    removal of HA-based matrices surrounding tumor cells in the
    tumor microenvironment of prostate tumors following systemic
    administration of PEGPH20. Prostate tumors were grown around the
    bone as a model of elevated interstitial fluid pressure, or IFP.
    Treatment commenced when tumors had reached approximately 500
    mm3 in
    size and pressure within the tumor had reached
    30-40 mm Hg.
 
    A summary of findings is as follows:
 
    |  |  |  | 
    |  |  | Prostate carcinoma cells assembled large pericellular coats
    in vitro that collapsed in the presence of rHuPH20.
    Similar pericellular matrices containing HA were also assembled
    in vivo following inoculation of tumors around the bone
    in mice. | 
|  | 
    |  |  | PEGPH20 significantly reduced tumor IFP in a dose dependent
    fashion, achieving more than 85% reduction in IFP
    following IV administration. Peritumoral HA remained
    depleted over three days after a single dose of enzyme. | 
|  | 
    |  |  | Consistent with the histologic collapse of pericellular HA
    surrounding the tumor cells, tumor water content significantly
    decreased over three days, consistent with changes detected in
    the tumor by MRI and IFP monitoring. | 
 
    Furthermore, a 3.5-fold selective increase in tumor vascular
    volume was achieved within eight hours
    post-dosing
    as a result of vascular decompression of blood vessels within
    the tumor, which was confirmed by histology and ultrasound.
 
    We recently initiated a first Phase I clinical trial for our
    PEGPH20 program. This first trial with the agent is a
    dose-escalation, multicenter, pharmacokinetic and
    pharmacodynamic, safety study. Patients with advanced solid
    tumors will receive intravenous administration of PEGPH20 as a
    single agent.
 
    Chemophase
 
    Chemophase is an investigative drug being developed for
    potential use in the treatment of patients with superficial
    bladder cancer. Our Chemophase program combines our PH20 enzyme
    with mitomycin C, a cytotoxic
    
    5
 
    drug, for direct administration into the bladder immediately
    after transurethral resection of bladder tumors, a standard
    surgical treatment for the disease. Many bladder tumor cells
    produce high quantities of HA and thus treatment to remove the
    HA coating could increase their exposure to mitomycin C. This
    may lead to a lower recurrence of the cancer and a better
    prognosis for patients.
 
    In June 2008, we announced the results of a Phase I/IIa clinical
    trial in which Chemophase was well tolerated and appears safe.
    The study reported no dose-limiting toxicities and no observed
    side effects attributable to the enzyme, and established the
    dose for subsequent clinical trials, therefore achieving the
    pre-defined primary objective of the study. In addition, there
    were no neutralizing antibodies to rHuPH20 detected and the
    plasma concentration of mitomycin C was either non-measureable
    or negligible and well below the threshold that may be
    predictive for myelosuppression (such as a decrease in bone
    marrow activity, resulting in fewer red blood cells, white blood
    cells and platelets). During the first quarter of 2009, we
    decided to reallocate certain resources previously budgeted for
    Chemophase to other higher priority programs, such as our
    Insulin-PH20 and PEGPH20 programs. We are currently exploring
    strategic alternatives that will allow the Chemophase program to
    continue its clinical development.
 
    Enhanze
    Technology
 
    Enhanze Technology, a proprietary drug enhancement approach
    using rHuPH20, is a broad technology that we have licensed to
    other pharmaceutical companies. When formulated with other
    injectable drugs, Enhanze Technology may facilitate the
    subcutaneous penetration and dispersion of these drugs by
    temporarily opening flow channels under the skin. Molecules as
    large as 200 nanometers may pass freely through the
    extracellular matrix, which recovers its normal density within
    approximately 24 hours, leading to a drug delivery platform
    which does not permanently alter the architecture of the skin.
    The principal focus of our Enhanze Technology platform is the
    use of rHuPH20 to facilitate subcutaneous route of
    administration for large molecule biological therapeutics.
    Potential benefits of subcutaneous administration of biologics
    include life cycle management, patient convenience and benefits
    to payors.
 
    We currently have Enhanze Technology partnerships with Roche and
    Baxter and we are currently seeking additional partnerships with
    pharmaceutical companies that market or develop drugs that could
    benefit from injection via the subcutaneous route of
    administration.
 
    Roche
    Partnership
 
    In December 2006, Halozyme and Roche entered into an Enhanze
    Technology partnership, or Roche Partnership. Under the terms of
    the Roche Partnership, Roche obtained a worldwide, exclusive
    license to develop and commercialize product combinations of
    rHuPH20 and up to thirteen Roche target compounds resulting from
    the collaboration. Under the terms of the Roche Partnership, we
    were obligated to scale up the production of rHuPH20 and to
    identify a second source manufacturer that would help meet
    anticipated production obligations arising from the partnership.
    To that end, during 2008, we entered into a Technology Transfer
    Agreement and a Clinical Supply Agreement with a second rHuPH20
    manufacturer. This manufacturer has the capacity to produce the
    clinical quantities we are required to deliver under the terms
    of the Roche Partnership and, we believe, the commercial
    quantities as well. The technology transfer was completed in
    2008 with
    scale-up and
    clinical supply manufacturing planned for 2009.
 
    Roche initially had the exclusive right to apply rHuPH20 to only
    three pre-defined Roche biologic targets with the option to
    exclusively develop and commercialize rHuPH20 with an additional
    ten targets. Pending the successful completion of various
    clinical, regulatory and sales events, Roche will be obligated
    to make milestone payments to us as well as royalty payments on
    the sales of products that result from the partnership. In
    December 2008, we announced that Roche elected to add a fourth
    exclusive target to the three original exclusive targets, and we
    previously announced the commencement of Phase I clinical trials
    for products directed at two of these four exclusive targets.
    Roche retains the option to exclusively develop and
    commercialize rHuPH20 with an additional nine targets through
    the payment of annual license maintenance fees.
    
    6
 
    Baxter
    Gammagard Partnership
 
    GAMMAGARD LIQUID is a current Baxter product that is indicated
    for the treatment of primary immunodeficiency disorders
    associated with defects in the immune system. In September 2007,
    Halozyme and Baxter entered into an Enhanze Technology
    partnership, or the Gammagard Partnership. Under the terms of
    this partnership, Baxter obtained a worldwide, exclusive license
    to develop and commercialize product combinations of rHuPH20
    with GAMMAGARD LIQUID. Pending the successful completion of
    various regulatory and sales milestones, Baxter will be
    obligated to make milestone payments to us as well as royalty
    payments on the sales of products that result from the
    partnership. Baxter is responsible for all development,
    manufacturing, clinical, regulatory, sales and marketing costs
    under the Gammagard Partnership, while we will be responsible
    for the supply of the rHuPH20 enzyme. In addition, Baxter has
    certain product development and commercialization obligations in
    major markets identified in the Gammagard License. In January of
    2009, we announced the commencement of a Phase III clinical
    trial for GAMMAGARD LIQUID with rHuPH20.
 
    HYLENEX
    Partnership
 
    HYLENEX is a human recombinant formulation of rHuPH20 that, when
    injected under the skin, facilitates the absorption and
    dispersion of other injected drugs or fluids. In February 2007,
    Halozyme and Baxter amended certain existing agreements relating
    to HYLENEX and entered into a new agreement for kits and
    formulations with rHuPH20, or the HYLENEX Partnership. Pending
    the successful completion of a series of regulatory and sales
    events, Baxter will be obligated to make milestone payments to
    us as well as royalty payments on the sales of products that
    result from the partnership. Baxter is responsible for
    development, manufacturing, clinical, regulatory, sales and
    marketing costs of the products covered by the HYLENEX
    Partnership. We will continue to supply Baxter with the active
    pharmaceutical ingredient for HYLENEX, and Baxter will prepare,
    fill, finish and package HYLENEX and hold it for subsequent
    distribution. In addition, under the HYLENEX Partnership, Baxter
    has a worldwide, exclusive license to develop and commercialize
    product combinations of rHuPH20 with Baxter hydration fluids and
    generic small molecule drugs, with the exception of combinations
    with (i) bisphosphonates, as well as (ii) cytostatic
    and cytotoxic chemotherapeutic agents, the rights to which have
    been retained by Halozyme.
 
    Cumulase
 
    Cumulase is an ex vivo (used outside of the body)
    formulation of rHuPH20 to replace the bovine (bull) enzyme
    currently used for the preparation of oocytes (eggs) prior to
    IVF during the process of intracytoplasmic sperm injection
    (ICSI), in which the enzyme is an essential component. Cumulase
    strips away the HA that surrounds the oocyte, allowing the
    clinician to then perform the ICSI procedure.
 
    Patents
    and Proprietary Rights
 
    Patents and other proprietary rights are essential to our
    business. Our success will depend in part on our ability to
    obtain patent protection for our inventions, to preserve our
    trade secrets and to operate without infringing the proprietary
    rights of third parties. Our strategy is to actively pursue
    patent protection in the United States and certain foreign
    jurisdictions for technology that we believe to be proprietary
    to us and that offers us a potential competitive advantage. Our
    patent portfolio includes six issued patents and a number of
    pending patent applications. We are the exclusive licensee of
    the University of Connecticut under a patent covering the DNA
    sequence that encodes human hyaluronidase. This patent expires
    in 2015. We have patent applications pertaining to recombinant
    human hyaluronidase and their methods of manufacture which, if
    issued, would expire in 2024. We believe our patent filings
    represent a barrier to entry for potential competitors looking
    to utilize these hyaluronidases.
 
    In addition to patents, we rely on unpatented trade secrets,
    proprietary know-how and continuing technological innovation. We
    seek protection of these trade secrets, proprietary know-how and
    innovation, in part, through confidentiality and proprietary
    information agreements. Our policy is to require our employees,
    directors, consultants, advisors, partners, outside scientific
    collaborators and sponsored researchers, other advisors and
    other individuals and entities to execute confidentiality
    agreements upon the start of employment, consulting or other
    contractual relationships with us. These agreements provide that
    all confidential information developed or made known to the
    individual or entity during the course of the relationship is to
    be kept confidential and not
    
    7
 
    disclosed to third parties except in specific circumstances. In
    the case of employees and some other parties, the agreements
    provide that all inventions conceived by the individual will be
    our exclusive property. Despite the use of these agreements and
    our efforts to protect our intellectual property, there will
    always be a risk of unauthorized use or disclosure of
    information. Furthermore, our trade secrets may otherwise become
    known to, or be independently developed by, our competitors.
 
    We also file trademark applications to protect the names of our
    products and product candidates. These applications may not
    mature to registration and may be challenged by third parties.
    We are pursuing trademark protection in a number of different
    countries around the world. There can be no assurances that
    registered or unregistered trademarks or trade names of our
    company will not infringe on third parties rights or will be
    acceptable to regulatory agencies.
 
    Research
    and Development Activities
 
    Our research and development expenses consist primarily of costs
    associated with the development and manufacturing of our product
    candidates, compensation and other expenses for research and
    development personnel, supplies and materials, costs for
    consultants and related contract research, facility costs,
    amortization and depreciation. We charge all research and
    development expenses to operations as they are incurred. Over
    the past two years, our research and development activities were
    primarily focused on the development of our proprietary product
    candidates. Our industry is subject to rapid technological
    advancements, developing industry standards and new product
    introductions and enhancements. As a result, our success
    depends, in large part, on our ability to develop and
    commercialize products.
 
    Our research and development expenditures in fiscal 2008, 2007
    and 2006 totaled approximately $44.2 million,
    $20.6 million and $9.2 million, respectively. Research
    and development expenditures in fiscal 2008 were primarily
    related to continued development of our various proprietary
    product candidates and the manufacturing and production of our
    rHuPH20 enzyme. Research and development expenditures in fiscal
    2007 were primarily related to the manufacturing and production
    of our rHuPH20 enzyme, and the development of Enhanze
    Technology, our HYLENEX product and our Chemophase product
    candidate. Research and development expenditures in fiscal 2006
    were primarily related to the development of our Cumulase and
    HYLENEX products and our Chemophase product candidate. We
    anticipate that we will incur significant research and
    development expenses in the future in connection with the
    development of product candidates.
 
    Manufacturing
 
    We have existing supply agreements with contract manufacturing
    organizations Avid Bioservices, Inc., or Avid, and Cook Pharmica
    LLC, or Cook, to produce bulk recombinant human hyaluronidase
    for clinical trials and commercial use. These manufacturers will
    produce the active pharmaceutical ingredient used in our
    products and product candidates under commercial good
    manufacturing practices for both clinical and commercial scale
    production and will provide support for the chemistry,
    manufacturing and controls sections for FDA regulatory filings.
    These manufacturers, Cook in particular, have limited experience
    manufacturing our active pharmaceutical ingredient batches, and
    we rely on their ability to successfully manufacture these
    batches according to product specifications. In addition, as a
    result of our contractual obligations to Roche, we will be
    required to significantly scale up our active pharmaceutical
    ingredient production at Cook during the next few years. We do
    not currently have a significant inventory of the active
    pharmaceutical ingredient used in our products and product
    candidates, so the ability of these manufacturers to maintain
    their status as FDA-approved manufacturing facilities and to
    successfully scale up our active pharmaceutical ingredient
    production is essential to our corporate strategy.
 
    Sales and
    Marketing
 
    HYLENEX
 
    Baxter is responsible for the development and execution of the
    HYLENEX sales and marketing strategy. Baxter has indicated that
    it intends to build a strong clinical foundation with
    post-marketing trials and to educate the market on the concept
    of difficult venous access. Post-marketing clinical trials are
    ongoing to explore the potential of HYLENEX in a variety of
    medical settings, since limited or no data with HYLENEX exist in
    conditions for
    
    8
 
    which Baxter will market the product. Examples of the trials
    include the completed INFUSE-Pediatric Rehydration study,
    completed INFUSE-LR study and completed INFUSE-Morphine study.
    In addition, Baxter is currently enrolling patients in a second
    INFUSE-Pediatric Rehydration Study, which is designed to
    determine the rehydration success rate (efficacy) and safety in
    children treated with HYLENEX-augmented subcutaneous fluid
    infusion. Baxter currently has a team of medical science
    liaisons as well as nurse educators that are engaging in
    education prior to commercial launch in the pediatric hydration
    market following publication of related clinical data. We expect
    the launch of HYLENEX by Baxter in the fourth quarter of 2009.
 
    Cumulase
 
    Our sales and marketing strategy in the IVF market consists of a
    multi-channel approach that targets patients, clinicians and
    suppliers. We have an existing non-exclusive distribution
    agreement with a distributor of IVF reagents and media that
    sells directly to IVF clinics in both the United States and
    European markets. During 2008, sales of Cumulase in the European
    Union and the United States were approximately $325,000 and
    $93,000, respectively.
 
    Competition
 
    HYLENEX
 
    Other manufacturers have FDA-approved products for use as
    spreading agents, including ISTA Pharmaceuticals, Inc., with an
    ovine (ram) hyaluronidase,
    Vitrase®,
    Amphastar Pharmaceuticals, Inc., with a bovine hyaluronidase,
    Amphadasetm,
    and Primapharm, Inc. also with a bovine hyaluronidase,
    Hydasetm.
    In addition, some commercial pharmacies compound hyaluronidase
    preparations for institutions and physicians even though
    compounded preparations are not FDA-approved products. Some
    compounding pharmacies do not test every batch of product for
    drug concentration, sterility and lack of pyrogens. In addition,
    HYLENEX is priced at a significant premium compared to the
    animal-derived hyaluronidases currently in the marketplace. This
    price premium may slow market adoption of HYLENEX and make
    market penetration difficult.
 
    Cumulase
 
    A key clinical selling point for Cumulase is that it may
    eliminate the risk of animal pathogen transmission and toxicity
    inherent in slaughterhouse preparations. The competing enzymes
    are of animal origin, creating an opportunity for a recombinant
    human enzyme alternative. Cumulase is priced at a premium
    compared to the animal-derived products sold by these leading
    IVF suppliers, which may make market penetration difficult.
 
    Government
    Regulations
 
    The FDA and comparable regulatory agencies in foreign countries
    regulate extensively the manufacture and sale of the
    pharmaceutical products that we have developed or currently are
    developing. The FDA has established guidelines and safety
    standards that are applicable to the laboratory and preclinical
    evaluation and clinical investigation of therapeutic products
    and stringent regulations that govern the manufacture and sale
    of these products. The process of obtaining regulatory approval
    for a new therapeutic product usually requires a significant
    amount of time and substantial resources. The steps typically
    required before a product can be produced and marketed for human
    use include:
 
    |  |  |  | 
    |  |  | Animal pharmacology studies to obtain preliminary information on
    the safety and efficacy of a drug; | 
|  | 
    |  |  | Laboratory and preclinical evaluation in vitro and
    in vivo including extensive toxicology studies. | 
 
    The results of these laboratory and preclinical studies may be
    submitted to the FDA as part of an investigational new drug, or
    IND, application. The sponsor of an IND application may commence
    human testing of the compound 30 days after submission of
    the IND, unless notified to the contrary by the FDA.
    
    9
 
    The clinical testing program for a new drug typically involves
    three phases:
 
    |  |  |  | 
    |  |  | Phase I investigations are generally conducted in healthy
    subjects. In certain instances, subjects with a
    life-threatening
    disease, such as cancer, may participate in Phase I studies that
    determine the maximum tolerated dose and initial safety of the
    product; | 
|  | 
    |  |  | Phase II studies are conducted in limited numbers of
    subjects with the disease or condition to be treated and are
    aimed at determining the most effective dose and schedule of
    administration, evaluating both safety and whether the product
    demonstrates therapeutic effectiveness against the
    disease; and | 
|  | 
    |  |  | Phase III studies involve large, well-controlled
    investigations in diseased subjects and are aimed at verifying
    the safety and effectiveness of the drug. | 
 
    Data from all clinical studies, as well as all laboratory and
    preclinical studies and evidence of product quality, typically
    are submitted to the FDA in a new drug application, or NDA.
    Although the FDAs requirements for clinical trials are
    well established and we believe that we have planned and
    conducted our clinical trials in accordance with the FDAs
    applicable regulations and guidelines, these requirements,
    including requirements relating to testing the safety of drug
    candidates, may be subject to change as a result of recent
    announcements regarding safety problems with approved drugs.
    Additionally, we could be required to conduct additional trials
    beyond what we had planned due to the FDAs safety
    and/or
    efficacy concerns or due to differing interpretations of the
    meaning of our clinical data. (See Part I 
    Item 1A, Risk Factors.)
 
    The FDAs Center for Drug Evaluation and Research, or CDER,
    must approve an NDA for a drug before it may be marketed in the
    United States. If we begin to market our proposed products for
    commercial sale in the U.S., any manufacturing operations that
    may be established in or outside the United States will also be
    subject to rigorous regulation, including compliance with
    current Good Manufacturing Practices, or cGMP. We also may be
    subject to regulation under the Occupational Safety and Health
    Act, the Environmental Protection Act, the Toxic Substance
    Control Act, the Export Control Act and other present and future
    laws of general application. In addition, the handling, care and
    use of laboratory animals are subject to the Guidelines for the
    Humane Use and Care of Laboratory Animals published by the
    National Institutes of Health.
 
    Regulatory obligations continue post-approval, and include the
    reporting of adverse events when a drug is utilized in the
    broader patient population. Promotion and marketing of drugs is
    also strictly regulated, with penalties imposed for violations
    of FDA regulations, the Lanham Act (trademark statute) and other
    federal and state laws, including the federal anti-kickback
    statute.
 
    We currently intend to continue to seek, directly or through our
    partners, approval to market our products and product candidates
    in foreign countries, which may have regulatory processes that
    differ materially from those of the FDA. We anticipate that we
    will rely upon pharmaceutical or biotechnology companies to
    license our proposed products or independent consultants to seek
    approvals to market our proposed products in foreign countries.
    We cannot assure you that approvals to market any of our
    proposed products can be obtained in any country. Approval to
    market a product in any one foreign country does not necessarily
    indicate that approval can be obtained in other countries.
 
    Product
    Liability Insurance
 
    We currently maintain product liability insurance on our
    products and clinical trials that provides coverage in the
    amount of $5,000,000 per incident and $5,000,000 in the
    aggregate.
 
    Executive
    Officers of the Registrant
 
    Information concerning our executive officers, including their
    names, ages and certain biographical information can be found in
    Part III-Item 10.
    Directors, Executive Officers and Corporate
    Governance. This information is incorporated by reference
    into Part I of this report.
    
    10
 
    Employees
 
    As of February 28, 2009, we had 129 full-time
    employees, including 91 engaged in research and clinical
    development activities. Included in our total headcount are
    43 employees who hold Ph.D. or M.D. degrees. We currently
    anticipate hiring approximately 10 additional employees by the
    end of 2009. None of our employees are unionized and we believe
    our relationship with our employees is good.
 
 
    Risks
    Related To Our Business
 
    We
    have generated only minimal revenue from product sales to date;
    we have a history of net losses and negative cash flow, and we
    may never achieve or maintain profitability.
 
    We have generated only minimal revenue from product sales,
    licensing fees and milestone payments to date and may never
    generate significant revenues from future product sales,
    licensing fees and milestone payments. Even if we do achieve
    significant revenues from product sales, licensing fees
    and/or
    milestone payments, we expect to incur significant operating
    losses over the next few years. We have never been profitable,
    and we may never become profitable. Through December 31,
    2008, we have incurred aggregate net losses of approximately
    $113.6 million.
 
    If any
    party to a key collaboration agreement, including us, fails to
    perform material obligations under such agreement, or if a key
    collaboration agreement is terminated for any reason, our
    business would significantly suffer.
 
    We have entered into key collaboration agreements under which we
    may receive significant future payments in the form of
    maintenance fees, milestone payments and royalties. In the event
    that a party fails to perform under a key collaboration
    agreement, or if a key collaboration agreement is terminated,
    the reduction in anticipated revenues could delay or suspend our
    product development activities for some of our product
    candidates as well as our commercialization efforts for some or
    all of our products. In addition, the termination of a key
    collaboration agreement by one of our partners could materially
    impact our ability to enter into additional collaboration
    agreements with new partners on favorable terms, if at all. In
    certain circumstances, the termination of a key collaboration
    agreement would require us to revise our corporate strategy
    going forward and reevaluate the applications and value of our
    technology.
 
    If our
    contract manufacturers are unable to manufacture significant
    amounts of the active pharmaceutical ingredient used in our
    products and product candidates, our product development and
    commercialization efforts could be delayed or stopped and our
    collaborative partnerships could be damaged.
 
    We have existing supply agreements with contract manufacturing
    organizations Avid and Cook to produce bulk recombinant human
    hyaluronidase for clinical trials and commercial use. These
    manufacturers will produce the active pharmaceutical ingredient
    used in our products and product candidates under cGMP for both
    clinical and commercial scale production and will provide
    support for the chemistry, manufacturing and controls sections
    for FDA regulatory filings. These manufacturers have limited
    experience manufacturing our active pharmaceutical ingredient
    batches, and we rely on their ability to successfully
    manufacture these batches according to product specifications.
    In addition, as a result of our contractual obligations to
    Roche, we will be required to significantly scale up our active
    pharmaceutical ingredient production at Cook during the next few
    years. We do not currently have a significant inventory of the
    active pharmaceutical ingredient used in our products and
    product candidates, so if these manufacturers do not maintain
    their status as FDA-approved manufacturing facilities, are
    unable to successfully scale up our active pharmaceutical
    ingredient production, or are unable to manufacture the active
    pharmaceutical ingredient used in our products and product
    candidates according to product specifications for any other
    reason, the commercialization of our products and the
    development of our product candidates will be delayed and our
    business will be adversely affected. We have not yet
    established, and may not be able to establish, favorable
    arrangements with additional manufacturers for these ingredients
    or products should the existing supplies become unavailable or
    in the event that our existing contract manufacturers are unable
    to adequately perform their responsibilities. Any delays or
    interruptions in the supply of materials by Avid
    and/or Cook
    could cause the delay of
    
    11
 
    clinical trials and could delay or prevent the commercialization
    of product candidates that may receive regulatory approval. Such
    delays would likely damage our relationship with our partners
    under our key collaboration agreements. Lastly, such delays or
    interruptions would have a material adverse effect on our
    business and financial condition.
 
    If we
    are unable to sufficiently develop our sales, marketing and
    distribution capabilities or enter into successful agreements
    with third parties to perform these functions, we will not be
    able to fully commercialize our products.
 
    We may not be successful in marketing and promoting our existing
    product candidates or any other products we develop or acquire
    in the future. We are currently in the process of developing our
    sales, marketing and distribution capabilities. However, our
    current capabilities in these areas are very limited. In order
    to commercialize any products successfully, we must internally
    develop substantial sales, marketing and distribution
    capabilities or establish collaborations or other arrangements
    with third parties to perform these services. We do not have
    extensive experience in these areas, and we may not be able to
    establish adequate in-house sales, marketing and distribution
    capabilities or engage and effectively manage relationships with
    third parties to perform any or all of such services. To the
    extent that we enter into co-promotion or other licensing
    arrangements, our product revenues are likely to be lower than
    if we directly marketed and sold our products, and any revenues
    we receive will depend upon the efforts of third parties, whose
    efforts may not meet our expectations or be successful.
 
    We depend upon the efforts of third parties, such as Baxter for
    HYLENEX, to promote and sell our current products, but there can
    be no assurance that the efforts of these third parties will
    meet our expectations or result in any significant product
    sales. While these third parties are largely responsible for the
    speed and scope of sales and marketing efforts, they may not
    dedicate the resources necessary to maximize product
    opportunities and our ability to cause these third parties to
    increase the speed and scope of their efforts may be limited. In
    addition, sales and marketing efforts could be negatively
    impacted by the delay or failure to obtain additional supportive
    clinical trial data for our products. In some cases, third party
    partners are responsible for conducting these additional
    clinical trials and our ability to increase the efforts and
    resources allocated to these trials may be limited.
 
    For example, the resources dedicated by Baxter to the sales and
    marketing of HYLENEX have not met our expectations to date and
    we believe that Baxters resource allocation has resulted
    in disappointing sales for HYLENEX. There can be no assurances,
    despite representations made to us by Baxter, that the resources
    will be increased to a level we believe to be appropriate.
 
    If we
    have problems with third parties that prepare, fill, finish and
    package our products and product candidates for distribution,
    our product commercialization and development efforts for these
    products and product candidates could be delayed or
    stopped.
 
    We rely on third parties to prepare, fill, finish and package
    our products and product candidates prior to their distribution.
    If we are unable to locate third parties to perform these
    functions on terms that are economically acceptable to us, the
    progress of clinical trials could be delayed or even suspended
    and the commercialization of approved product candidates could
    be delayed or prevented. For example, we previously entered into
    an agreement with another third party to prepare, fill, finish
    and package Cumulase, but that third party did not meet the
    manufacturing, technical and cost targets that were originally
    established and, as a result, we terminated our agreement with
    that third party. We currently utilize a subsidiary of Baxter to
    prepare, fill, finish and package HYLENEX under a development
    and supply agreement. Baxter has only limited experience
    manufacturing HYLENEX batches, and we rely on its ability to
    successfully manufacture HYLENEX batches according to product
    specifications. Any delays or interruptions in Baxters
    ability to manufacture HYLENEX batches in amounts necessary to
    meet product demand could have a material adverse impact on our
    business and financial condition.
    
    12
 
    If our
    proprietary and partnered product candidates do not receive and
    maintain regulatory approvals, they will not be commercialized,
    and this failure would substantially impair our ability to
    generate revenues.
 
    Approval from the FDA is necessary to manufacture and market
    pharmaceutical products in the United States. Most other
    countries in which we may do business have similar requirements.
    To date, two of our product candidates have received regulatory
    approval from the FDA.
 
    The process for obtaining FDA approval is extensive,
    time-consuming and costly, and there is no guarantee that the
    FDA will approve any NDAs that may be filed with respect to any
    of our proprietary or partnered product candidates, or that the
    timing of any such approval will be appropriate for our desired
    product launch schedule and other business priorities, which are
    subject to change. There are no proprietary or partnered product
    candidates currently in the NDA approval process, and we and our
    partners may not be successful in obtaining such approvals for
    any potential products.
 
    Our
    proprietary and partnered product candidates may not receive
    regulatory approvals for a variety of reasons, including
    unsuccessful clinical trials.
 
    Clinical testing of pharmaceutical products is a long, expensive
    and uncertain process and the failure of a clinical trial can
    occur at any stage. Even if initial results of preclinical
    studies or clinical trial results are promising, we or our
    partners may obtain different results that fail to show the
    desired levels of safety and efficacy, or we may not, or our
    partners may not, obtain FDA approval for a variety of other
    reasons. Clinical trials for any of our proprietary or partnered
    product candidates could be unsuccessful, which would delay or
    prohibit regulatory approval and commercialization of the
    product candidates. FDA approval can be delayed, limited or not
    granted for many reasons, including, among others:
 
    |  |  |  | 
    |  |  | FDA review may not find a product candidate safe or effective
    enough to merit either continued testing or final approval; | 
|  | 
    |  |  | FDA review may not find that the data from preclinical testing
    and clinical trials justifies approval, or they may require
    additional studies that would make it commercially unattractive
    to continue pursuit of approval; | 
|  | 
    |  |  | the FDA may reject our trial data or disagree with our
    interpretations of either clinical trial data or applicable
    regulations; | 
|  | 
    |  |  | the cost of a clinical trial may be greater than what we
    originally anticipate, and we may decide to not pursue FDA
    approval for such a trial; | 
|  | 
    |  |  | the FDA may not approve our manufacturing processes or
    facilities, or the processes or facilities of our contract
    manufacturers or raw material suppliers; | 
|  | 
    |  |  | the FDA may change its formal or informal approval requirements
    and policies, act contrary to previous guidance, or adopt new
    regulations; or | 
|  | 
    |  |  | the FDA may approve a product candidate for indications that are
    narrow or under conditions that place the product at a
    competitive disadvantage, which may limit our sales and
    marketing activities or otherwise adversely impact the
    commercial potential of a product. | 
 
    If the FDA does not approve a proprietary or partnered product
    candidate in timely fashion on commercially viable terms, or if
    development of any product candidate is terminated due to
    difficulties or delays encountered in the regulatory approval
    process, it could have a material adverse impact on our business
    and we will become more dependent on the development of other
    proprietary or partnered product candidates
    and/or our
    ability to successfully acquire other products and technologies.
    There can be no assurances that any proprietary or partnered
    product candidate will receive regulatory approval in a timely
    manner, or at all.
 
    We anticipate that certain proprietary and partnered products
    will be marketed, and perhaps manufactured, in foreign
    countries. The process of obtaining regulatory approvals in
    foreign countries is subject to delay and failure for many of
    the same reasons set forth above as well as for reasons that
    vary from jurisdiction to jurisdiction. The approval process
    varies among countries and jurisdictions and can involve
    additional testing. The time required to
    
    13
 
    obtain approval may differ from that required to obtain FDA
    approval. Foreign regulatory agencies may not provide approvals
    on a timely basis, if at all. Approval by the FDA does not
    ensure approval by regulatory authorities in other countries or
    jurisdictions, and approval by one foreign regulatory authority
    does not ensure approval by regulatory authorities in other
    foreign countries or jurisdictions or by the FDA.
 
    If we
    or our partners fail to comply with regulatory requirements,
    regulatory agencies may take action against us or them, which
    could significantly harm our business.
 
    Any approved products, along with the manufacturing processes,
    post-approval clinical data, labeling, advertising and
    promotional activities for these products, are subject to
    continual requirements and review by the FDA and other
    regulatory bodies. Regulatory authorities subject a marketed
    product, its manufacturer and the manufacturing facilities to
    continual review and periodic inspections. We will be subject to
    ongoing FDA requirements, including required submissions of
    safety and other post-market information and reports,
    registration requirements, cGMP regulations, requirements
    regarding the distribution of samples to physicians and
    recordkeeping requirements. The cGMP regulations include
    requirements relating to quality control and quality assurance,
    as well as the corresponding maintenance of records and
    documentation. We rely on the compliance by our contract
    manufacturers with cGMP regulations and other regulatory
    requirements relating to the manufacture of our products. We and
    our partners are also subject to state laws and registration
    requirements covering the distribution of our products.
    Regulatory agencies may change existing requirements or adopt
    new requirements or policies. We or our partners may be slow to
    adapt or may not be able to adapt to these changes or new
    requirements.
 
    Regulatory requirements applicable to pharmaceutical products
    make the substitution of suppliers and manufacturers costly and
    time consuming. We have no internal manufacturing capabilities
    and are, and expect to be in the future, entirely dependent on
    contract manufacturers and suppliers for the manufacture of our
    products and for their active and other ingredients. The
    disqualification of these manufacturers and suppliers through
    their failure to comply with regulatory requirements could
    negatively impact our business because the delays and costs in
    obtaining and qualifying alternate suppliers (if such
    alternative suppliers are available, which we cannot assure)
    could delay clinical trials or otherwise inhibit our ability to
    bring approved products to market, which would have a material
    adverse effect on our business and financial condition.
 
    Later discovery of previously unknown problems with our
    proprietary or partnered products, manufacturing processes or
    failure to comply with regulatory requirements, may result in
    any of the following:
 
    |  |  |  | 
    |  |  | restrictions on our products or manufacturing processes; | 
|  | 
    |  |  | warning letters; | 
|  | 
    |  |  | withdrawal of the products from the market; | 
|  | 
    |  |  | voluntary or mandatory recall; | 
|  | 
    |  |  | fines; | 
|  | 
    |  |  | suspension or withdrawal of regulatory approvals; | 
|  | 
    |  |  | suspension or termination of any of our ongoing clinical trials; | 
|  | 
    |  |  | refusal to permit the import or export of our products; | 
|  | 
    |  |  | refusal to approve pending applications or supplements to
    approved applications that we submit; | 
|  | 
    |  |  | product seizure; or | 
|  | 
    |  |  | injunctions or the imposition of civil or criminal penalties. | 
 
    Future
    acquisitions could disrupt our business and harm our financial
    condition.
 
    In order to augment our product pipeline or otherwise strengthen
    our business, we may decide to acquire additional businesses,
    products and technologies. As we have limited experience in
    evaluating and completing
    
    14
 
    acquisitions, our ability as an organization to make such
    acquisitions is unproven. Acquisitions could require significant
    capital infusions and could involve many risks, including, but
    not limited to, the following:
 
    |  |  |  | 
    |  |  | we may have to issue convertible debt or equity securities to
    complete an acquisition, which would dilute our stockholders and
    could adversely affect the market price of our common stock; | 
|  | 
    |  |  | an acquisition may negatively impact our results of operations
    because it may require us to amortize or write down amounts
    related to goodwill and other intangible assets, or incur or
    assume substantial debt or liabilities, or it may cause adverse
    tax consequences, substantial depreciation or deferred
    compensation charges; | 
|  | 
    |  |  | we may encounter difficulties in assimilating and integrating
    the business, products, technologies, personnel or operations of
    companies that we acquire; | 
|  | 
    |  |  | certain acquisitions may impact our relationship with existing
    or potential partners who are competitive with the acquired
    business, products or technologies; | 
|  | 
    |  |  | acquisitions may require significant capital infusions and the
    acquired businesses, products or technologies may not generate
    sufficient value to justify acquisition costs; | 
|  | 
    |  |  | an acquisition may disrupt our ongoing business, divert
    resources, increase our expenses and distract our management; | 
|  | 
    |  |  | acquisitions may involve the entry into a geographic or business
    market in which we have little or no prior experience; and | 
|  | 
    |  |  | key personnel of an acquired company may decide not to work for
    us. | 
 
    If any of these risks occurred, it could adversely affect our
    business, financial condition and operating results. We cannot
    assure you that we will be able to identify or consummate any
    future acquisitions on acceptable terms, or at all. If we do
    pursue any acquisitions, it is possible that we may not realize
    the anticipated benefits from such acquisitions or that the
    market will not view such acquisitions positively.
 
    We may
    wish to raise funds in the next twelve months, and there can be
    no assurance that such funds will be available.
 
    During the next twelve months, we may wish to raise additional
    capital to continue the development of our product candidates or
    for other corporate purposes. Our current cash position and
    expected revenues during the next few years will not constitute
    the amount of capital necessary for us to continue the
    development of our proprietary product candidates and to fund
    general operations. In addition, if we engage in acquisitions of
    companies, products or technology in order to execute our
    business strategy, we may need to raise additional capital. We
    expect to raise additional capital in the future through one or
    more financing vehicles that may be available to us. These
    financing vehicles currently include: (i) the public
    offering of securities; (ii) new collaborative agreements;
    (iii) expansions or revisions to existing collaborative
    relationships; (iv) private financings
    and/or
    (v) other equity or debt financings.
 
    Currently, warrants to purchase approximately 1.9 million
    shares of our common stock are outstanding and this amount of
    outstanding warrants may make us a less desirable candidate for
    investment for some potential investors. Considering our stage
    of development, the nature of our capital structure and general
    market conditions, if we are required to raise additional
    capital in the future, the additional financing may not be
    available on favorable terms, or at all. If we are successful in
    raising additional capital, a substantial number of additional
    shares may be issued and these shares will dilute the ownership
    interest of our current investors.
 
    If
    proprietary or partnered product candidates are approved by the
    FDA but do not gain market acceptance, our business may suffer
    and we may not be able to fund future operations.
 
    Assuming that our proprietary or partnered product candidates
    obtain the necessary regulatory approvals, a number of factors
    may affect the market acceptance of these existing product
    candidates or any other products which are developed or acquired
    in the future, including, among others:
 
    |  |  |  | 
    |  |  | the price of products relative to other therapies for the same
    or similar treatments; | 
    
    15
 
 
    |  |  |  | 
    |  |  | the perception by patients, physicians and other members of the
    health care community of the effectiveness and safety of these
    products for their prescribed treatments; | 
|  | 
    |  |  | our ability to fund our sales and marketing efforts and the
    ability and willingness of our partners to fund sales and
    marketing efforts; | 
|  | 
    |  |  | the degree to which the use of these products is restricted by
    the product label approved by the FDA; | 
|  | 
    |  |  | the effectiveness of our sales and marketing efforts and the
    effectiveness of the sales and marketing efforts of our
    partners; and | 
|  | 
    |  |  | the introduction of generic competitors. | 
 
    If these products do not gain market acceptance, we may not be
    able to fund future operations, including the development or
    acquisition of new product candidates
    and/or our
    sales and marketing efforts for our approved products, which
    would cause our business to suffer.
 
    In addition, our proprietary and partnered product candidates
    will be restricted to the labels approved by the FDA and these
    restrictions may limit the marketing and promotion of the
    ultimate products. If the approved labels are restrictive, the
    sales and marketing efforts for these products may be negatively
    affected.
 
    Developing
    and marketing pharmaceutical products for human use involves
    product liability risks, for which we currently have limited
    insurance coverage.
 
    The testing, marketing and sale of pharmaceutical products
    involves the risk of product liability claims by consumers and
    other third parties. Although we maintain product liability
    insurance coverage, product liability claims can be high in the
    pharmaceutical industry and our insurance may not sufficiently
    cover our actual liabilities. If product liability claims were
    to be made against us, it is possible that our insurance
    carriers may deny, or attempt to deny, coverage in certain
    instances. If a lawsuit against us is successful, then the lack
    or insufficiency of insurance coverage could materially and
    adversely affect our business and financial condition.
    Furthermore, various distributors of pharmaceutical products
    require minimum product liability insurance coverage before
    purchase or acceptance of products for distribution. Failure to
    satisfy these insurance requirements could impede our ability to
    achieve broad distribution of our proposed products and the
    imposition of higher insurance requirements could impose
    additional costs on us. In addition, since many of our partnered
    product candidates include the pharmaceutical products of a
    third party, we run the risk that problems with the third party
    pharmaceutical product will give rise to liability claims
    against us.
 
    Our
    inability to attract, hire and retain key management and
    scientific personnel could negatively affect our
    business.
 
    Our success depends on the performance of key management and
    scientific employees with biotechnology experience. Given our
    relatively small staff size relative to the number of programs
    currently under development, we depend substantially on our
    ability to hire, train, retain and motivate high quality
    personnel, especially our scientists and management team. If we
    are unable to retain existing personnel or identify or hire
    additional personnel, we may not be able to research, develop,
    commercialize or market our product candidates as expected or on
    a timely basis and we may not be able to adequately support
    current and future alliances with strategic partners.
 
    Furthermore, if we were to lose key management personnel,
    particularly Jonathan Lim, M.D., our President and Chief
    Executive Officer, or Gregory Frost, Ph.D., our Chief
    Scientific Officer, then we would likely lose some portion of
    our institutional knowledge and technical know-how, potentially
    causing a substantial delay in one or more of our development
    programs until adequate replacement personnel could be hired and
    trained. For example, Dr. Frost has been with us from soon
    after our inception, and he possesses a substantial amount of
    knowledge about our development efforts. If we were to lose his
    services, we would experience delays in meeting our product
    development schedules. In 2008, we adopted a severance policy
    applicable to all employees and a change in control policy
    applicable to senior executives. We have not adopted any other
    policies or entered into any other agreements specifically
    designed to motivate officers or other employees to remain with
    us.
 
    We do not have key man life insurance policies on the lives of
    any of our employees, including Dr. Lim and Dr. Frost.
    
    16
 
    If we
    or our partners do not achieve projected development goals in
    the timeframes we publicly announce or otherwise expect, the
    commercialization of our products and the development of our
    product candidates may be delayed and, as a result, our stock
    price may decline.
 
    We publicly articulate the estimated timing for the
    accomplishment of certain scientific, clinical, regulatory and
    other product development goals. The accomplishment of any goal
    is typically based on numerous assumptions and the achievement
    of a particular goal may be delayed for any number of reasons
    both within and outside of our control. If scientific,
    regulatory, strategic or other factors cause us to not meet a
    goal, regardless of whether that goal has been publicly
    articulated or not, the commercialization of our products and
    the development of our proprietary and partnered product
    candidates may be delayed. In addition, the consistent failure
    to meet publicly announced milestones may erode the credibility
    of our management team with respect to future milestone
    estimates.
 
    Risks
    Related To Ownership of Our Common Stock
 
    Future
    sales of shares of our common stock upon the exercise of
    currently outstanding securities or pursuant to our universal
    shelf registration statement may negatively affect our stock
    price.
 
    As a result of our October 2004 financing transaction, we issued
    warrants for the purchase of approximately 2.7 million
    shares of common stock at a purchase price of $2.25 per share.
    Currently, approximately 1.9 million shares of common stock
    remain issuable upon the exercise of these warrants. The
    exercise of these warrants could result in dilution to
    stockholders at the time of exercise which could negatively
    affect our stock price.
 
    We currently have the ability to offer and sell up to
    $50.0 million of additional equity or debt securities under
    a currently effective universal shelf registration statement.
    Sales of substantial amounts of shares of our common stock or
    other securities under our universal shelf registration
    statement could lower the market price of our common stock and
    impair our ability to raise capital through the sale of equity
    securities. In the future, we may issue additional options,
    warrants or other derivative securities convertible into our
    common stock.
 
    Our
    stock price is subject to significant volatility.
 
    We participate in a highly dynamic industry which often results
    in significant volatility in the market price of common stock
    irrespective of company performance. As a result, our high and
    low sales prices of our common stock during the twelve months
    ended December 31, 2008 were $8.26 and $2.60, respectively.
    We expect our stock price to continue to be subject to
    significant volatility and, in addition to the other risks and
    uncertainties described elsewhere in this Annual Report on
    Form 10-K
    and all other risks and uncertainties that are either not known
    to us at this time or which we deem to be immaterial, any of the
    following factors may lead to a significant drop in our stock
    price:
 
    |  |  |  | 
    |  |  | our failure, or the failure of one of our third party partners,
    to comply with the terms of our collaboration agreements; | 
|  | 
    |  |  | the termination, for any reason, of any of our collaboration
    agreements; | 
|  | 
    |  |  | the sale of common stock by any significant stockholder,
    including, but not limited to, direct or indirect sales by
    members of management or our Board of Directors; | 
|  | 
    |  |  | general negative conditions in the healthcare industry; | 
|  | 
    |  |  | general negative conditions in the financial markets; | 
|  | 
    |  |  | the failure, for any reason, to obtain FDA approval for any of
    our proprietary or partnered product candidates; | 
|  | 
    |  |  | the failure, for any reason, to secure or defend our
    intellectual property position; | 
|  | 
    |  |  | for those products that are approved by the FDA, the failure of
    the FDA to approve such products in a timely manner consistent
    with the FDAs historical approval process; | 
|  | 
    |  |  | the suspension of any clinical trial due to safety or patient
    tolerability issues; | 
|  | 
    |  |  | the suspension of any clinical trial due to market
    and/or
    competitive conditions; | 
    
    17
 
 
    |  |  |  | 
    |  |  | our failure, or the failure of our third party partners, to
    successfully commercialize products approved by the FDA; | 
|  | 
    |  |  | our failure, or the failure of our third party partners, to
    generate product revenues anticipated by investors; | 
|  | 
    |  |  | problems with an API contract manufacturer or a fill and finish
    manufacturer for any product or product candidate; | 
|  | 
    |  |  | the sale of additional debt
    and/or
    equity securities by us; and | 
|  | 
    |  |  | the departure of key personnel. | 
 
    Trading
    in our stock has historically been limited, so investors may not
    be able to sell as much stock as they want to at prevailing
    market prices.
 
    Our stock has historically traded at a low daily trading volume.
    If low trading volume continues, it may be difficult for
    stockholders to sell their shares in the public market at any
    given time at prevailing prices.
 
    The
    exercise of outstanding warrants may drive down the market price
    of our stock.
 
    Outstanding warrants that may be exercised for approximately
    1.9 million shares of common stock will expire per their
    terms in October 2009. Some warrant holders may choose to sell
    outstanding shares of common stock in order to finance the
    exercise of their warrants and this pattern of selling may
    result in a reduction of our common stocks market price.
 
    Risks
    Related To Our Industry
 
    Compliance
    with the extensive government regulations to which we are
    subject is expensive and time consuming and may result in the
    delay or cancellation of product sales, introductions or
    modifications.
 
    Extensive industry regulation has had, and will continue to
    have, a significant impact on our business. All pharmaceutical
    companies, including ours, are subject to extensive, complex,
    costly and evolving regulation by the federal government,
    principally the FDA and, to a lesser extent, the U.S. Drug
    Enforcement Administration, or DEA, and foreign and state
    government agencies. The Federal Food, Drug and Cosmetic Act,
    the Controlled Substances Act and other domestic and foreign
    statutes and regulations govern or influence the testing,
    manufacturing, packaging, labeling, storing, recordkeeping,
    safety, approval, advertising, promotion, sale and distribution
    of our products. Under certain of these regulations, we and our
    contract suppliers and manufacturers are subject to periodic
    inspection of our or their respective facilities, procedures and
    operations
    and/or the
    testing of products by the FDA, the DEA and other authorities,
    which conduct periodic inspections to confirm that we and our
    contract suppliers and manufacturers are in compliance with all
    applicable regulations. The FDA also conducts pre- approval and
    post-approval reviews and plant inspections to determine whether
    our systems, or our contract suppliers and
    manufacturers processes, are in compliance with cGMP and
    other FDA regulations. If we, or our contract supplier, fail
    these inspections, we may not be able to commercialize our
    product in a timely manner without incurring significant
    additional costs, or at all.
 
    In addition, the FDA imposes a number of complex regulatory
    requirements on entities that advertise and promote
    pharmaceuticals including, but not limited to, standards and
    regulations for
    direct-to-consumer
    advertising, off-label promotion, industry-sponsored scientific
    and educational activities, and promotional activities involving
    the internet.
 
    We are dependent on receiving FDA and other governmental
    approvals prior to manufacturing, marketing and shipping our
    products. Consequently, there is always a risk that the FDA or
    other applicable governmental authorities will not approve our
    products, or will take post-approval action limiting or revoking
    our ability to sell our products, or that the rate, timing and
    cost of such approvals will adversely affect our product
    introduction plans or results of operations.
    
    18
 
    We may
    be required to initiate or defend against legal proceedings
    related to intellectual property rights, which may result in
    substantial expense, delay and/or cessation of the development
    and commercialization of our products.
 
    We rely on patents to protect our intellectual property rights.
    The strength of this protection, however, is uncertain. For
    example, it is not certain that:
 
    |  |  |  | 
    |  |  | our patents and pending patent applications cover products
    and/or
    technology that we invented first; | 
|  | 
    |  |  | we were the first to file patent applications for these
    inventions; | 
|  | 
    |  |  | others will not independently develop similar or alternative
    technologies or duplicate our technologies; | 
|  | 
    |  |  | any of our pending patent applications will result in issued
    patents; and | 
|  | 
    |  |  | any of our issued patents, or patent pending applications that
    result in issued patents, will be held valid and infringed in
    the event the patents are asserted against others. | 
 
    We currently own or license several U.S. patents and also
    have pending patent applications. There can be no assurance that
    our existing patents, or any patents issued to us as a result of
    our pending patent applications, will provide a basis for
    commercially viable products, will provide us with any
    competitive advantages, or will not face third party challenges
    or be the subject of further proceedings limiting their scope or
    enforceability. Such limitations in our patent portfolio could
    have a material adverse effect on our business and financial
    condition. In addition, if any of our pending patent
    applications do not result in issued patents, this could have a
    material adverse effect on our business and financial condition.
 
    We may become involved in interference proceedings in the
    U.S. Patent and Trademark Office to determine the priority
    of our inventions. In addition, costly litigation could be
    necessary to protect our patent position. We also rely on
    trademarks to protect the names of our products. These
    trademarks may not be acceptable to regulatory agencies. In
    addition, these trademarks may be challenged by others. If we
    enforce our trademarks against third parties, such enforcement
    proceedings may be expensive. We also rely on trade secrets,
    unpatented proprietary know-how and continuing technological
    innovation that we seek to protect with confidentiality
    agreements with employees, consultants and others with whom we
    discuss our business. Disputes may arise concerning the
    ownership of intellectual property or the applicability or
    enforceability of these agreements, and we might not be able to
    resolve these disputes in our favor.
 
    In addition to protecting our own intellectual property rights,
    third parties may assert patent, trademark or copyright
    infringement or other intellectual property claims against us
    based on what they believe are their own intellectual property
    rights. If we become involved in any intellectual property
    litigation, we may be required to pay substantial damages,
    including but not limited to treble damages, for past
    infringement if it is ultimately determined that our products
    infringe a third partys intellectual property rights. Even
    if infringement claims against us are without merit, defending a
    lawsuit takes significant time, may be expensive and may divert
    managements attention from other business concerns.
    Further, we may be stopped from developing, manufacturing or
    selling our products until we obtain a license from the owner of
    the relevant technology or other intellectual property rights.
    If such a license is available at all, it may require us to pay
    substantial royalties or other fees.
 
    Patent
    protection for protein-based therapeutic products and other
    biotechnology inventions is subject to a great deal of
    uncertainty, and if patent laws or the interpretation of patent
    laws change, our competitors may be able to develop and
    commercialize products based on our discoveries.
 
    Patent protection for protein-based therapeutic products is
    highly uncertain and involves complex legal and factual
    questions. In recent years, there have been significant changes
    in patent law, including the legal standards that govern the
    scope of protein and biotechnology patents. Standards for
    patentability of full-length and partial genes, and their
    corresponding proteins, are changing. Recent court decisions
    have made it more difficult to obtain patents, by making it more
    difficult to satisfy the requirement of non-obviousness, have
    decreased the availability of injunctions against infringers,
    and have increased the likelihood of challenging the validity of
    a patent through a declaratory judgment action. Taken together,
    these decisions could make it more difficult and costly for us
    to obtain, license and enforce our patents. In addition, in
    recent years, several members of the United States Congress have
    
    19
 
    made numerous proposals to change the patent statute. These
    proposals include measures that, among other things, would
    expand the ability of third parties to oppose United States
    patents, introduce the first to file standard to the
    United States patent system, and limit damages an infringer is
    required to pay. If the patent statute is changed, the scope,
    validity and enforceability of our patents may be significantly
    decreased.
 
    There also have been, and continue to be, policy discussions
    concerning the scope of patent protection awarded to
    biotechnology inventions. Social and political opposition to
    biotechnology patents may lead to narrower patent protection
    within the biotechnology industry. Social and political
    opposition to patents on genes and proteins may lead to narrower
    patent protection, or narrower claim interpretation, for genes,
    their corresponding proteins and inventions related to their
    use, formulation and manufacture. Patent protection relating to
    biotechnology products is also subject to a great deal of
    uncertainty outside the United States, and patent laws are
    evolving and undergoing revision in many countries. Changes in,
    or different interpretations of, patent laws worldwide may
    result in our inability to obtain or enforce patents, and may
    allow others to use our discoveries to develop and commercialize
    competitive products, which would impair our business.
 
    If
    third party reimbursement and customer contracts are not
    available, our products may not be accepted in the
    market.
 
    Our ability to earn sufficient returns on our products will
    depend in part on the extent to which reimbursement for our
    products and related treatments will be available from
    government health administration authorities, private health
    insurers, managed care organizations and other healthcare
    providers.
 
    Third-party payors are increasingly attempting to limit both the
    coverage and the level of reimbursement of new drug products to
    contain costs. Consequently, significant uncertainty exists as
    to the reimbursement status of newly approved healthcare
    products. Third party payors may not establish adequate levels
    of reimbursement for the products that we commercialize, which
    could limit their market acceptance and result in a material
    adverse effect on our financial condition.
 
    Customer contracts, such as with group purchasing organizations
    and hospital formularies, will often not offer contract or
    formulary status without either the lowest price or substantial
    proven clinical differentiation. If our products are compared to
    animal-derived hyaluronidases by these entities, it is possible
    that neither of these conditions will be met, which could limit
    market acceptance and result in a material adverse effect on our
    financial condition.
 
    The
    rising cost of healthcare and related pharmaceutical product
    pricing has led to cost containment pressures that could cause
    us to sell our products at lower prices, resulting in less
    revenue to us.
 
    Any of the proprietary or partnered products that have been, or
    in the future are, approved by the FDA may be purchased or
    reimbursed by state and federal government authorities, private
    health insurers and other organizations, such as health
    maintenance organizations and managed care organizations. Such
    third party payors increasingly challenge pharmaceutical product
    pricing. The trend toward managed healthcare in the United
    States, the growth of such organizations, and various
    legislative proposals and enactments to reform healthcare and
    government insurance programs, including the Medicare
    Prescription Drug Modernization Act of 2003, could significantly
    influence the manner in which pharmaceutical products are
    prescribed and purchased, resulting in lower prices
    and/or a
    reduction in demand. Such cost containment measures and
    healthcare reforms could adversely affect our ability to sell
    our products. Furthermore, individual states have become
    increasingly aggressive in passing legislation and implementing
    regulations designed to control pharmaceutical product pricing,
    including price or patient reimbursement constraints, discounts,
    restrictions on certain product access, importation from other
    countries and bulk purchasing. Legally mandated price controls
    on payment amounts by third party payors or other restrictions
    could negatively and materially impact our revenues and
    financial condition. We anticipate that we will encounter
    similar regulatory and legislative issues in most other
    countries outside the United States.
    
    20
 
    We
    face intense competition and rapid technological change that
    could result in the development of products by others that are
    superior to our proprietary and partnered products under
    development.
 
    Our proprietary and partnered products have numerous competitors
    in the United States and abroad including, among others, major
    pharmaceutical and specialized biotechnology firms, universities
    and other research institutions that have developed competing
    products. For example, for HYLENEX, such competitors include,
    but are not limited to, Sigma-Aldrich Corporation, ISTA
    Pharmaceuticals, Inc., Amphastar Pharmaceuticals, Inc. and
    Primapharm, Inc. among others. For our Insulin-PH20 product
    candidate, such competitors include Biodel Inc. and Mannkind
    Corporation. These competitors may develop technologies and
    products that are more effective, safer, or less costly than our
    current or future proprietary and partnered product candidates
    or that could render our technologies and product candidates
    obsolete or noncompetitive. Many of these competitors have
    substantially more resources and product development,
    manufacturing and marketing experience and capabilities than we
    do. In addition, many of our competitors have significantly
    greater experience than we do in undertaking preclinical testing
    and clinical trials of pharmaceutical product candidates and
    obtaining FDA and other regulatory approvals of products and
    therapies for use in healthcare.
 
    |  |  | 
    | Item 1B. | Unresolved
    Staff Comments | 
 
    None.
 
 
    Our administrative offices and research facilities are currently
    located in San Diego, California. We lease an aggregate of
    approximately 51,500 square feet of office and research
    space for a monthly rent expense of approximately $114,000, net
    of costs and property taxes associated with the operation and
    maintenance of the subleased facilities. We believe the current
    space is adequate for our immediate needs.
 
    |  |  | 
    | Item 3. | Legal
    Proceedings | 
 
    From time to time, we may be involved in litigation relating to
    claims arising out of operations in the normal course of our
    business. Any of these claims could subject us to costly
    litigation and, while we generally believe that we have adequate
    insurance to cover many different types of liabilities, our
    insurance carriers may deny coverage or our policy limits may be
    inadequate to fully satisfy any damage awards or settlements. If
    this were to happen, the payment of any such awards could have a
    material adverse effect on our results of operations and
    financial position. Additionally, any such claims, whether or
    not successful, could damage our reputation and business. We
    currently are not a party to any legal proceedings, the adverse
    outcome of which, in managements opinion, individually or
    in the aggregate, would have a material adverse effect on our
    results of operations or financial position.
 
    |  |  | 
    | Item 4. | Submission
    of Matters to a Vote of Security Holders | 
 
    Not applicable.
    
    21
 
 
    PART II
 
    |  |  | 
    | Item 5. | Market
    for Registrants Common Equity, Related Stockholder Matters
    and Issuer Purchases of Equity Securities | 
 
    Market
    Information
 
    Since May 10, 2007, our common stock has traded on the
    NASDAQ Stock Market under the symbol HALO. During
    the period from January 1, 2007 to May 9, 2007, our
    common stock traded under the symbol HTI on The
    American Stock Exchange (the AMEX). The following
    table sets forth the high and low sales prices per share of our
    common stock during each quarter of the two most recent fiscal
    years:
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | 2008 |  |  | 2007 |  | 
|  |  | High |  |  | Low |  |  | High |  |  | Low |  | 
|  | 
| 
    First Quarter
 |  | $ | 7.25 |  |  | $ | 4.19 |  |  | $ | 9.70 |  |  | $ | 6.75 |  | 
| 
    Second Quarter
 |  | $ | 6.62 |  |  | $ | 4.75 |  |  | $ | 11.00 |  |  | $ | 8.00 |  | 
| 
    Third Quarter
 |  | $ | 8.26 |  |  | $ | 5.35 |  |  | $ | 10.50 |  |  | $ | 7.49 |  | 
| 
    Fourth Quarter
 |  | $ | 7.29 |  |  | $ | 2.60 |  |  | $ | 9.46 |  |  | $ | 6.00 |  | 
 
    On February 27, 2009, the closing sales price of our common
    stock on the NASDAQ Stock Market was $4.43 per share. As of
    February 27, 2009, we had approximately 3,500 stockholders
    of record. We have not paid any dividends on our common stock
    since our inception and do not expect to pay dividends on our
    common stock in the foreseeable future.
    
    22
 
    Stock
    Performance Graph and Cumulative Total Return
 
    Notwithstanding any statement to the contrary in any of our
    previous or future filings with the SEC, the following
    information relating to the price performance of our common
    stock shall not be deemed to be filed with the SEC
    or to be soliciting material under the Securities
    Exchange Act of 1934, as amended, or the Exchange Act, and it
    shall not be deemed to be incorporated by reference into any of
    our filings under the Securities Act or the Exchange Act, except
    to the extent we specifically incorporate it by reference into
    such filing.
 
    The graph below compares Halozyme Therapeutics, Inc.s
    cumulative
    57-month
    total shareholder return on common stock with the cumulative
    total returns of the NASDAQ Composite index and the NASDAQ
    Biotechnology index. The graph tracks the performance of a $100
    investment in our common stock and in each of the indexes (with
    the reinvestment of all dividends) from March 12, 2004 to
    December 31, 2008. The historical stock price performance
    included in this graph is not necessarily indicative of future
    stock price performance.
 
    COMPARISON
    OF 57 MONTH CUMULATIVE TOTAL RETURN*
    Among Halozyme Therapeutics, Inc., The NASDAQ Composite Index
    And The NASDAQ Biotechnology Index
 
 
    |  |  | 
    | * | $100 invested on March 12, 2004 in stock or on
    February 29, 2004 in index-including reinvestment of
    dividends. Fiscal year ending December 31.
 | 
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  |  | 3/04 |  |  | 12/04 |  |  | 12/05 |  |  | 12/06 |  |  | 12/07 |  |  | 12/08 | 
| 
    Halozyme Therapeutics, Inc.
 |  |  | $ | 100.00 |  |  |  | $ | 53.01 |  |  |  | $ | 43.86 |  |  |  | $ | 193.98 |  |  |  | $ | 171.33 |  |  |  | $ | 134.94 |  | 
| 
    NASDAQ Composite
 |  |  | $ | 100.00 |  |  |  | $ | 107.97 |  |  |  | $ | 110.72 |  |  |  | $ | 124.09 |  |  |  | $ | 135.48 |  |  |  | $ | 78.93 |  | 
| 
    NASDAQ Biotechnology
 |  |  | $ | 100.00 |  |  |  | $ | 103.56 |  |  |  | $ | 120.50 |  |  |  | $ | 120.06 |  |  |  | $ | 122.08 |  |  |  | $ | 112.72 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
 
    Recent
    Sales of Unregistered Securities
 
    During the quarter ended December 31, 2008, holders of
    various outstanding warrants exercised their rights to purchase
    391,308 common shares for gross proceeds of approximately
    $429,000. The shares and underlying warrants were purchased for
    investment in a private placement exempt from the registration
    requirements of the Securities Act pursuant to Section 4(2)
    thereof.
    
    23
 
    |  |  | 
    | Item 6. | Selected
    Financial Data | 
 
    The selected consolidated financial data set forth below as of
    December 31, 2008 and 2007, and for the fiscal years ended
    December 31, 2008, 2007 and 2006, are derived from our
    audited consolidated financial statements included elsewhere in
    this report. This information should be read in conjunction with
    those consolidated financial statements, the notes thereto, and
    with Managements Discussion and Analysis of
    Financial Condition and Results of Operations. The
    selected consolidated financial data set forth below as of
    December 31, 2006, 2005 and 2004, and for the fiscal years
    ended December 31, 2005 and 2004, are derived from our
    audited consolidated financial statements that are contained in
    reports previously filed with the SEC, not included herein.
 
    Summary
    Financial Information
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | Years Ended December 31, |  | 
| 
    Statement of Operations Data:
 |  | 2008 |  |  | 2007 |  |  | 2006 |  |  | 2005 |  |  | 2004 |  | 
|  | 
| 
    Total revenues
 |  | $ | 8,764,139 |  |  | $ | 3,799,521 |  |  | $ | 981,746 |  |  | $ | 127,209 |  |  | $ |  |  | 
| 
    Net loss
 |  |  | (48,654,199 | ) |  |  | (23,896,183 | ) |  |  | (14,751,986 | ) |  |  | (13,275,373 | ) |  |  | (9,091,376 | ) | 
| 
    Net loss per share, basic and diluted
 |  | $ | (0.61 | ) |  | $ | (0.32 | ) |  | $ | (0.24 | ) |  | $ | (0.26 | ) |  | $ | (0.26 | ) | 
| 
    Shares used in computing net loss per share, basic and diluted
 |  |  | 79,843,707 |  |  |  | 74,317,930 |  |  |  | 62,610,265 |  |  |  | 50,317,021 |  |  |  | 35,411,127 |  | 
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | As of December 31, |  | 
| 
    Balance Sheet Data:
 |  | 2008 |  |  | 2007 |  |  | 2006 |  |  | 2005 |  |  | 2004 |  | 
|  | 
| 
    Cash and cash equivalents
 |  | $ | 63,715,906 |  |  | $ | 97,679,085 |  |  | $ | 44,189,403 |  |  | $ | 19,132,194 |  |  | $ | 16,007,714 |  | 
| 
    Working capital
 |  |  | 59,794,370 |  |  |  | 92,312,937 |  |  |  | 41,343,010 |  |  |  | 17,802,804 |  |  |  | 14,566,209 |  | 
| 
    Total assets
 |  |  | 76,562,713 |  |  |  | 103,460,374 |  |  |  | 46,091,320 |  |  |  | 20,510,255 |  |  |  | 16,403,671 |  | 
| 
    Deferred revenues
 |  |  | 49,448,456 |  |  |  | 39,269,491 |  |  |  | 19,981,537 |  |  |  | 254,138 |  |  |  |  |  | 
| 
    Total liabilities
 |  |  | 61,182,717 |  |  |  | 45,692,450 |  |  |  | 23,010,085 |  |  |  | 2,303,368 |  |  |  | 1,579,413 |  | 
| 
    Stockholders equity
 |  |  | 15,379,996 |  |  |  | 57,767,924 |  |  |  | 23,081,235 |  |  |  | 18,206,887 |  |  |  | 14,824,258 |  | 
 
    |  |  | 
    | Item 7. | Managements
    Discussion and Analysis of Financial Condition and Results of
    Operation | 
 
    In addition to historical information, the following
    discussion contains forward-looking statements that are subject
    to risks and uncertainties. Actual results may differ
    substantially from those referred to herein due to a number of
    factors, including but not limited to risks described in the
    Part I, Item 1A Risks Factors and
    elsewhere in this Annual Report.
 
    Overview
 
    We are a biopharmaceutical company dedicated to the development
    and commercialization of products targeting the extracellular
    matrix for the endocrinology, oncology, dermatology and drug
    delivery markets. Our existing products and our products under
    development are based on intellectual property covering the
    family of human enzymes known as hyaluronidases. Hyaluronidases
    are enzymes (proteins) that break down hyaluronan, or HA, which
    is a naturally occurring space-filling, gel-like substance that
    is a major component of tissues throughout the body, such as
    skin and bone. Our technology is based on our proprietary
    recombinant human PH20 enzyme, or rHuPH20, a human synthetic
    version of hyaluronidase. The PH20 enzyme is a naturally
    occurring enzyme that digests HA to temporarily break down the
    gel, thereby facilitating the penetration and diffusion of other
    drugs and fluids that are injected under the skin or in the
    muscle. Our proprietary technology is applicable to multiple
    therapeutic areas and may be used to both expand existing
    markets and create new ones. Our technology may be utilized for
    the development of our own proprietary products and it may also
    be applied to existing and developmental products of third
    parties through key partnerships.
    
    24
 
    Our operations to date have been limited to organizing and
    staffing our operating subsidiary, Halozyme, Inc., acquiring,
    developing and securing our technology and undertaking product
    development for our existing products and a limited number of
    product candidates. Over the last year, we increased our focus
    on our proprietary product pipeline and have expanded
    investments in our proprietary product candidates. We currently
    have five programs in various stages of research and
    development, including three programs in clinical development.
    We also have three partnered programs. Our key partnerships are
    with F. Hoffmann-La Roche, Ltd and Hoffmann-La Roche,
    Inc., or Roche, to apply
    Enhanzetm
    Technology to Roches biological therapeutic compounds for
    up to 13 targets and with Baxter Healthcare Corporation, or
    Baxter, to apply Enhanze Technology to Baxters biological
    therapeutic compound, GAMMAGARD
    LIQUIDtm.
    We have two marketed products: HYLENEX, a registered trademark
    of Baxter International, Inc., a product used as an adjuvant to
    increase the absorption and dispersion of other injected drugs
    and fluids, and
    Cumulase®,
    a product used for in vitro fertilization, or IVF.
    Currently, we have only limited revenue from the sales of
    HYLENEX and Cumulase, in addition to revenues from our
    partnerships with Baxter and Roche.
 
    We have product candidates in the research, preclinical and
    clinical stages, but future revenues from the sales of these
    product candidates will depend on our ability to develop,
    manufacture, obtain regulatory approvals for and successfully
    commercialize product candidates. It may be years, if ever,
    before we are able to obtain regulatory approvals for these
    product candidates. We have incurred net operating losses each
    year since inception, with an accumulated deficit of
    approximately $113.6 million as of December 31, 2008.
 
    We currently have an effective universal shelf registration
    statement which allows us to offer and sell up to
    $50.0 million of equity or debt securities and we may
    utilize this universal shelf in the future to raise capital to
    fund the continued development of our product candidates, the
    commercialization of our products or for other general corporate
    purposes.
 
    Collaborative
    Partnerships
 
    Roche
    Partnership
 
    In December 2006, Halozyme and Roche entered into an Enhanze
    Technology partnership, or Roche Partnership. Under the terms of
    the Roche Partnership, Roche obtained a worldwide, exclusive
    license to develop and commercialize product combinations of
    rHuPH20 and up to thirteen Roche target compounds resulting from
    the collaboration. Under the terms of the Roche Partnership, we
    were obligated to scale up the production of rHuPH20 and to
    identify a second source manufacturer that would help meet
    anticipated production obligations arising from the partnership.
    To that end, during 2008, we entered into a Technology Transfer
    Agreement and a Clinical Supply Agreement with a second rHuPH20
    manufacturer. This manufacturer has the capacity to produce the
    quantities we are required to deliver under the terms of the
    Roche Partnership. The technology transfer was completed in 2008
    with
    scale-up and
    clinical supply manufacturing planned for 2009.
 
    Roche initially had the exclusive right to apply rHuPH20 to only
    three pre-defined Roche biologic targets with the option to
    exclusively develop and commercialize rHuPH20 with an additional
    ten targets. Pending the successful completion of various
    clinical, regulatory and sales events, Roche will be obligated
    to make milestone payments to us as well as royalty payments on
    the sales of products that result from the partnership. In
    December 2008, we announced that Roche elected to add a fourth
    exclusive target to the three original exclusive targets, and we
    previously announced the commencement of Phase I clinical trials
    for products directed at two of these four exclusive targets.
    Roche retains the option to exclusively develop and
    commercialize rHuPH20 with an additional nine targets through
    the payment of annual license maintenance fees.
 
    Baxter
    Gammagard Partnership
 
    GAMMAGARD LIQUID is a current Baxter product that is indicated
    for the treatment of primary immunodeficiency disorders
    associated with defects in the immune system. In September 2007,
    Halozyme and Baxter entered into an Enhanze Technology
    partnership, or the Gammagard Partnership. Under the terms of
    this partnership, Baxter obtained a worldwide, exclusive license
    to develop and commercialize product combinations of rHuPH20
    with GAMMAGARD LIQUID. Pending the successful completion of
    various regulatory and sales milestones, Baxter will be
    obligated to make milestone payments to us as well as royalty
    payments on the sales of
    
    25
 
    products that result from the partnership. Baxter is responsible
    for all development, manufacturing, clinical, regulatory, sales
    and marketing costs under the Gammagard Partnership, while we
    will be responsible for the supply of the rHuPH20 enzyme. In
    addition, Baxter has certain product development and
    commercialization obligations in major markets identified in the
    Gammagard License. In January of 2009 we announced the
    commencement of a Phase III clinical trial for GAMMAGARD
    LIQUID with rHuPH20.
 
    HYLENEX
    Partnership
 
    HYLENEX is a human recombinant formulation of rHuPH20 that, when
    injected under the skin, facilitates the absorption and
    dispersion of other injected drugs or fluids. In February 2007,
    Halozyme and Baxter amended certain existing agreements relating
    to HYLENEX and entered into a new agreement for kits and
    formulations with rHuPH20, or the HYLENEX Partnership. Pending
    the successful completion of a series of regulatory and sales
    events, Baxter will be obligated to make milestone payments to
    us as well as royalty payments on the sales of products that
    result from the partnership. Baxter is responsible for
    development, manufacturing, clinical, regulatory, sales and
    marketing costs of the products covered by the HYLENEX
    Partnership. We will continue to supply Baxter with the active
    pharmaceutical ingredient for HYLENEX, and Baxter will prepare,
    fill, finish and package HYLENEX and hold it for subsequent
    distribution. In addition, under the HYLENEX Partnership, Baxter
    has a worldwide, exclusive license to develop and commercialize
    product combinations of rHuPH20 with Baxter hydration fluids and
    generic small molecule drugs, with the exception of combinations
    with (i) bisphosphonates, as well as (ii) cytostatic
    and cytotoxic chemotherapeutic agents, the rights to which have
    been retained by Halozyme.
 
    Revenues
 
    Revenues from product sales depend on our ability to develop,
    manufacture, obtain regulatory approvals for and successfully
    commercialize our products and product candidates.
 
    Revenues from license and collaboration agreements are
    recognized based on the performance requirements of the
    underlying agreements. Revenue is deferred for fees received
    before they are earned. Nonrefundable upfront payment and
    license fees, where we have an ongoing involvement or
    performance obligation, are recorded as deferred revenue and
    recognized as revenue over the contract or development period.
    Milestone payments are generally recognized as revenue upon the
    achievement of the milestones as specified in the underlying
    agreement, assuming we meet certain criteria. Royalty revenues
    from the sale of licensed products are recognized upon the sale
    of such products.
 
    During 2006 and 2007, we entered into the Roche Partnership, the
    HYLENEX Partnership and the Gammagard Partnership. Elements of
    these partnerships include nonrefundable license fees,
    reimbursements of research and development services, various
    clinical, regulatory or sales milestones and future
    product-based or royalty payments, as applicable. Due to our
    ongoing involvement obligations under these partnerships, we
    recorded the nonrefundable license fees as deferred revenues.
    Such revenues are being recognized over the terms of the
    underlying agreements that define the terms of the partnerships.
 
    Costs
    and Expenses
 
    Cost of Sales.  Cost of sales consists
    primarily of raw materials, third-party manufacturing costs,
    fill and finish costs, and freight costs associated with the
    sales of Cumulase, and the API for HYLENEX.
 
    Research and Development.  Our research and
    development expenses consist primarily of costs associated with
    the development and manufacturing of our product candidates,
    compensation and other expenses for research and development
    personnel, supplies and materials, costs for consultants and
    related contract research, clinical trials, facility costs and
    depreciation. We charge all research and development expenses to
    operations as they are incurred. Our research and development
    activities are primarily focused on the development of our
    various product candidates.
 
    Since our inception in 1998 through 2008, we have incurred
    research and development expenses of $93.1 million. From
    2006 through 2008, approximately 11% of our research and
    development expenses were associated with the research and
    development of our recombinant human PH20 enzyme used in our
    HYLENEX
    
    26
 
    product, and approximately 11% and 8% of our research and
    development expenses were associated with the development of our
    PEGPH20 and Insulin-PH20 product candidates, respectively. Due
    to the uncertainty in obtaining FDA approval, our reliance on
    third parties and competitive pressures, we are unable to
    estimate with any certainty the additional costs we will incur
    in the continued development of our proprietary product
    candidates for commercialization. However, we expect our
    research and development expenses to increase substantially if
    we are able to advance our product candidates into later stages
    of clinical development.
 
    Clinical development timelines, likelihood of success and total
    costs vary widely. We anticipate that we will make ongoing
    determinations as to which research and development projects to
    pursue and how much funding to direct to each project on an
    ongoing basis in response to the scientific and clinical
    progress of each product candidate and other market and
    regulatory developments. We plan on focusing our resources on
    those proprietary and partnered product candidates that
    represent the most valuable economic and strategic opportunities.
 
    Product candidate completion dates and costs vary significantly
    for each product candidate and are difficult to estimate. The
    lengthy process of seeking regulatory approvals and the
    subsequent compliance with applicable regulations require the
    expenditure of substantial resources. Any failure by us to
    obtain, or any delay in obtaining, regulatory approvals could
    cause our research and development expenditures to increase and,
    in turn, have a material adverse effect on our results of
    operations. We cannot be certain when, or if, our product
    candidates will receive regulatory approval or whether any net
    cash inflow from our other product candidates, or development
    projects, will commence.
 
    Selling, General and Administrative.  Selling,
    general and administrative, or SG&A, expenses consist
    primarily of compensation and other expenses related to our
    corporate operations and administrative employees, accounting
    and legal fees, other professional services expenses, marketing
    expenses, as well as other expenses associated with operating as
    a publicly traded company. We anticipate continued increases in
    SG&A expenses as our operations continue to expand.
 
    Critical
    Accounting Policies and Estimates
 
    Our discussion and analysis of our financial position and
    results of operations are based on our consolidated financial
    statements, which have been prepared in accordance with
    U.S. generally accepted accounting principles, or
    U.S. GAAP. The preparation of our consolidated financial
    statements requires us to make estimates and judgments that
    affect the reported amounts of assets, liabilities, revenues and
    expenses and related disclosure of contingent assets and
    liabilities. We review our estimates on an ongoing basis. We
    base our estimates on historical experience and on various other
    assumptions that we believe to be reasonable under the
    circumstances, the results of which form the basis for making
    judgments about the carrying values of assets and liabilities.
    Actual results may differ from these estimates under different
    assumptions or conditions. We believe the following accounting
    policies to be critical to the judgments and estimates used in
    the preparation of our consolidated financial statements.
 
    Revenue
    Recognition
 
    We generate revenues from product sales and collaborative
    agreements. Payments received under collaborative agreements may
    include nonrefundable fees at the inception of the agreements,
    license fees, milestone payments for specific achievements
    designated in the collaborative agreements, reimbursements of
    research and development services
    and/or
    royalties on sales of products resulting from collaborative
    arrangements.
 
    We recognize revenue in accordance with SEC Staff Accounting
    Bulletin, or SAB, No. 104, Revenue Recognition, and
    Emerging Issues Task Force, or EITF, Issue
    No. 00-21,
    Revenue Arrangements with Multiple Deliverables. Revenue
    is recognized when all of the following criteria are met:
    (1) persuasive evidence of an arrangement exists;
    (2) delivery has occurred or services have been rendered;
    (3) the sellers price to the buyer is fixed and
    determinable; and (4) collectibility is reasonably assured.
 
    Product
    Sales
 
    Revenues from the sale of Cumulase are recognized when the
    transfer of ownership occurs, which is upon shipment to the
    distributors. We are obligated to accept returns for product
    that does not meet product
    
    27
 
    specifications. Historically, we have not had any product
    returns; therefore, no allowance for product returns has been
    established.
 
    Under the terms of the HYLENEX Partnership, we supply Baxter the
    API for HYLENEX at our fully burdened cost plus a margin. Baxter
    fills and finishes HYLENEX and holds it for subsequent
    distribution, at which time we ensure it meets product
    specifications and release it as available for sale. Because of
    our continued involvement in the development and production
    process of HYLENEX, the earnings process is not considered to be
    complete. Accordingly, we defer the revenue and related product
    costs on the API for HYLENEX until the product is filled,
    finished, packaged and released. Baxter may only return the API
    for HYLENEX to us if it does not conform to certain specified
    criteria set forth in the HYLENEX Partnership or upon
    termination of such agreement. We have historically demonstrated
    that the API shipped to Baxter has consistently met the
    specified criteria. Therefore, no allowance for product returns
    has been established. In addition, we receive product-based
    payments upon the sale of HYLENEX by Baxter, in accordance with
    the terms of the HYLENEX Partnership. Product sales revenues are
    recognized as we earn such revenues based on Baxters
    shipments of HYLENEX to its distributors when such amounts can
    be reasonably estimated. Through February 2009, Baxter has
    prepaid $10.0 million of product-based payments which has
    been deferred and is being recognized as earned.
 
    Revenues
    under Collaborative Agreements
 
    Revenues from collaborative and licensing agreements are
    recognized based on the performance requirements of the
    underlying agreements. Revenue is deferred for fees received
    before they are earned. Nonrefundable upfront payments and
    license fees, in which we have an ongoing involvement or
    performance obligation, are recorded as deferred revenue and
    recognized as revenue over the contract or development period.
    We recognize milestone payments upon the achievement of
    specified milestones if (1) the milestone is substantive in
    nature and the achievement of the milestone was not reasonably
    assured at the inception of the agreement, (2) the fees are
    nonrefundable and (3) our performance obligations after the
    milestone achievement will continue to be funded by our
    collaborator at a level comparable to the level before the
    milestone achievement. Any milestone payments received prior to
    satisfying these revenue recognition criteria are recorded as
    deferred revenue. Reimbursements of research and development
    services are recognized as revenue during the period in which
    the services are performed. Royalties to be received based on
    sales of licensed products by our collaborators incorporating
    our products are recognized as earned in accordance with the
    terms of the underlying agreements.
 
    Share-Based
    Payments
 
    We account for share-based awards exchanged for employee
    services in accordance with Statement of Financial Accounting
    Standards, or SFAS, No. 123(R), Share-Based Payment,
    which we adopted effective January 1, 2006, including the
    provisions of the SAB No. 107 and 110. We use the fair
    value method to account for share-based payments with a modified
    prospective application which provides for certain changes to
    the method for valuing share-based compensation. The valuation
    provisions of SFAS No. 123R apply to new awards and
    awards that are outstanding on the effective date and
    subsequently modified or cancelled. Under the modified
    prospective application, prior periods were not revised for
    comparative purposes.
 
    The fair value of each option award is estimated on the date of
    grant using a Black-Scholes-Merton option pricing model, or
    Black-Scholes model, that uses assumptions regarding a number of
    complex and subjective variables. These variables include, but
    are not limited to, our expected stock price volatility, actual
    and projected employee stock option exercise behaviors,
    risk-free interest rate and expected dividends. Expected
    volatilities are based on the historical volatility of our
    common stock and our peer group. The expected term of options
    granted is based on analyses of historical employee termination
    rates and option exercises. The risk-free interest rates are
    based on the U.S. Treasury yield in effect at the time of
    the grant. Since we do not expect to pay dividends on our common
    stock in the foreseeable future, we estimated the dividend yield
    to be 0%. SFAS No. 123R requires forfeitures to be
    estimated at the time of grant and revised, if necessary, in
    subsequent periods if actual forfeitures differ from those
    estimates. We estimate pre-vesting forfeitures based on our
    historical experience and those of our peer group.
    
    28
 
    If factors change and we employ different assumptions in the
    application of SFAS No. 123R in future periods, the
    share-based compensation expense that we record under
    SFAS No. 123R may differ significantly from what we
    have recorded in the current period. There is a high degree of
    subjectivity involved when using option pricing models to
    estimate share-based compensation under SFAS No. 123R.
    Certain share-based payments, such as employee stock options,
    may expire worthless or otherwise result in zero intrinsic value
    as compared to the fair values originally estimated on the grant
    date and reported in our consolidated financial statements.
    Alternatively, values may be realized from these instruments
    that are significantly in excess of the fair values originally
    estimated on the grant date and reported in our consolidated
    financial statements. There is currently no market-based
    mechanism or other practical application to verify the
    reliability and accuracy of the estimates stemming from these
    valuation models, nor is there a means to compare and adjust the
    estimates to actual values. Although the fair value of employee
    share-based awards is determined in accordance with
    SFAS No. 123R and SAB No. 107 and 110 using
    an option-pricing model, that value may not be indicative of the
    fair value observed in a willing buyer/willing seller market
    transaction.
 
    Research
    and Development Expenses
 
    Research and development expenses include salaries and benefits,
    facilities and other overhead expenses, clinical trials,
    research-related manufacturing services, contract services and
    other outside expenses. Research and development expenses are
    charged to operations as they are incurred. Advance payments,
    including nonrefundable amounts, for goods or services that will
    be used or rendered for future research and development
    activities are deferred and capitalized. Such amounts will be
    recognized as an expense as the related goods are delivered or
    the related services are performed. If the goods will not be
    delivered, or services will not be rendered, then the
    capitalized advance payment is charged to expense.
 
    Milestone payments that we make in connection with in-licensed
    technology or product candidates are expensed as incurred when
    there is uncertainty in receiving future economic benefits from
    the licensed technology or product candidates. We consider the
    future economic benefits from the licensed technology or product
    candidates to be uncertain until such licensed technology or
    product candidates are approved for marketing by the
    U.S. Food and Drug Administration or when other significant
    risk factors are abated. For expense accounting purposes,
    management has viewed future economic benefits for all of our
    licensed technology or product candidates to be uncertain.
 
    Payments in connection with our clinical trials are often made
    under contracts with multiple contract research organizations
    that conduct and manage clinical trials on our behalf. The
    financial terms of these agreements are subject to negotiation
    and vary from contract to contract and may result in uneven
    payment flows. Generally, these agreements set forth the scope
    of work to be performed at a fixed fee, unit price or on a
    time-and-material
    basis. Payments under these contracts depend on factors such as
    the successful enrollment or treatment of patients or the
    completion of other clinical trial milestones. Expenses related
    to clinical trials are accrued based on our estimates
    and/or
    representations from service providers regarding work performed,
    including actual level of patient enrollment, completion of
    patient studies and clinical trials progress. Other incidental
    costs related to patient enrollment or treatment are accrued
    when reasonably certain. If the contracted amounts are modified
    (for instance, as a result of changes in the clinical trial
    protocol or scope of work to be performed), we modify our
    accruals accordingly on a prospective basis. Revisions in scope
    of contract are charged to expense in the period in which the
    facts that give rise to the revision become reasonably certain.
    Because of the uncertainty of possible future changes to the
    scope of work in clinical trials contracts, we are unable to
    quantify an estimate of the reasonably likely effect of any such
    changes on our consolidated results of operations or financial
    position. Historically, we have had no material changes in our
    clinical trial expense accruals that would have had a material
    impact on our consolidated results of operations or financial
    position.
 
    Inventory
 
    Inventory consists of our Cumulase product and our API for
    HYLENEX. Inventory primarily represents raw materials used in
    production, work in process and finished goods inventory on
    hand, valued at actual cost. Inventory is reviewed periodically
    for slow-moving or obsolete items. If a launch of a new product
    is delayed, inventory may
    
    29
 
    not be fully utilized and could be subject to impairment, at
    which point we would record a reserve to adjust inventory to its
    net realizable value.
 
    Fair
    Value Measurements
 
    Effective January 1, 2008, we adopted
    SFAS No. 157, Fair Value Measurements, and FASB
    Staff Position, or FSP,
    No. FAS 157-3,
    Determining the Fair Value of a Financial Asset When the
    Market for That Asset is Not Active. SFAS No. 157
    defines fair value, establishes a framework for measuring fair
    value under U.S. GAAP and enhances disclosures about fair
    value measurements. FSP
    No. FAS 157-3
    clarifies the application of SFAS No. 157 in a market
    that is not active and provides an example to illustrate key
    considerations in determining the fair value of a financial
    asset when the market for that financial asset is not active.
    The adoption of SFAS No. 157 and FSP
    No. FAS 157-3
    did not have a material impact on our consolidated financial
    position or results of operations.
 
    SFAS 157 prioritizes the inputs used in measuring fair
    value into the following hierarchy:
 
    |  |  |  | 
| 
    Level 1
 |  | Quoted prices (unadjusted) in active markets for identical
    assets or liabilities; | 
| 
    Level 2
 |  | Inputs other than quoted prices included within Level 1
    that are either directly or indirectly observable; and | 
| 
    Level 3
 |  | Unobservable inputs in which little or no market activity
    exists, therefore requiring an entity to develop its own
    assumptions about the assumptions that market participants would
    use in pricing. | 
 
 
    Cash and cash equivalents of approximately $63.7 million at
    December 31, 2008 are carried at fair value based on quoted
    market prices for identical securities (Level 1 inputs).
 
    Effective January 1, 2008, we adopted
    SFAS No. 159, The Fair Value Option for Financial
    Assets and Financial Liabilities. SFAS No. 159
    allows an entity the irrevocable option to elect to measure
    specified financial assets and liabilities in their entirety at
    fair value on a
    contract-by-contract
    basis. If an entity elects the fair value option for an eligible
    item, changes in the items fair value must be reported as
    unrealized gains and losses in earnings at each subsequent
    reporting date. In adopting SFAS No. 159, we did not
    elect the fair value option for any of our financial assets or
    financial liabilities.
 
    The above listing is not intended to be a comprehensive list of
    all of our accounting policies. In many cases, the accounting
    treatment of a particular transaction is specifically dictated
    by U.S. GAAP. There are also areas in which our
    managements judgment in selecting any available
    alternative would not produce a materially different result.
    Please see our audited consolidated financial statements and
    notes thereto included in Part II  Item 8
    of this report, which contain accounting policies and other
    disclosures required by U.S. GAAP.
 
    Results
    of Operations
 
    Comparison
    of Years Ended December 31, 2008 and 2007
 
    Revenues Under Collaborative
    Agreements  Revenues under collaborative
    agreements were approximately $8.1 million for the year
    ended December 31, 2008 compared to $3.2 million for
    the year ended December 31, 2007. Revenues under
    collaborative agreements primarily consisted of the amortization
    of license fees and milestone payments received from Baxter and
    Roche of approximately $3.4 million and $1.9 million
    in 2008 and 2007, respectively. Revenues under collaborative
    agreements also included reimbursements for research and
    development services from Baxter of $3.0 million and
    $543,000 and Roche of $1.7 million and $749,000 in 2008 and
    2007, respectively. Such reimbursements are for research and
    development services rendered by us at the request of Baxter and
    Roche and the amount of future revenues related to reimbursable
    research and development services is uncertain. We expect the
    non-reimbursement revenues under our collaborative agreements to
    continue to increase in future periods provided that we meet
    various clinical and regulatory milestones set forth in such
    agreements.
 
    Product Sales  Product sales were
    $712,000 for the year ended December 31, 2008 compared to
    $640,000 for the year ended December 31, 2007. The increase
    of $72,000, or 11%, was primarily due to the increase in sales
    
    30
 
    of HYLENEX and the API for HYLENEX. Based upon representations
    made to us by Baxter regarding the 2009 launch of HYLENEX, we
    expect product sales to increase in future periods due to
    increased HYLENEX sales.
 
    Cost of Sales  Cost of sales were
    $332,000 for the year ended December 31, 2008 compared to
    $240,000 for the year ended December 31, 2007. The increase
    of $92,000, or 38%, was due to the increase in sales of the API
    for HYLENEX and an increase in the cost of Cumulase sales in
    2008.
 
    Research and Development  Research and
    development expenses were $44.2 million for the year ended
    December 31, 2008 compared to $20.6 million for the
    year ended December 31, 2007. The increase of
    $23.6 million, or 115%, was primarily due to the increase
    in outsourced research and development costs of
    $10.6 million, related to our various preclinical programs
    and the manufacturing
    scale-up of
    our rHuPH20 enzyme, and increased compensation costs of
    $6.6 million, of which $878,000 related to increased
    share-based compensation, primarily due to the increase in our
    research and development headcount. At December 31, 2008,
    our headcount for research and development functions totaled
    96 employees, compared with 56 employees at
    December 31, 2007. Additionally, our clinical trial
    expenses increased by $3.0 million, research supplies
    expenses increased by $1.3 million and facilities expenses
    increased by $1.2 million resulting from leasing larger
    facilities effective July 2007 to accommodate the increase in
    headcount in 2008 as compared to 2007. We expect certain
    research and development costs to increase in future periods as
    we increase our research efforts and headcount, expand our
    clinical trials and continue to develop and manufacture our
    product candidates.
 
    Selling, General and Administrative 
    SG&A expenses were $14.6 million for the year ended
    December 31, 2008 compared to $11.2 million for the
    year ended December 31, 2007. The increase of approximately
    $3.4 million, or 30%, was primarily due to the increase in
    compensation costs of $2.0 million, of which $237,000
    related to share-based compensation. At December 31, 2008,
    our headcount for SG&A functions totaled 34 employees,
    compared with 27 employees at December 31, 2007. Legal
    expenses also increased during this period by $955,000, of which
    $576,000 related to patent applications and $635,000 related to
    the settlement of an arbitration matter. Facilities expenses
    also increased by $246,000 and insurance expenses increased by
    $273,000 in 2008 as compared to 2007. We expect SG&A
    expenses to increase in future periods as we continue to expand
    our operations.
 
    Share-Based Compensation  Total
    compensation cost for our share-based payments was
    $3.7 million for the year ended December 31, 2008
    compared to $2.6 million for the year ended
    December 31, 2007. Research and development expense
    included share-based compensation of approximately
    $1.5 million and $663,000 in 2008 and 2007, respectively.
    SG&A expenses included share-based compensation of
    approximately $2.2 million and $1.9 million in 2008
    and 2007, respectively. As of December 31, 2008,
    $6.5 million of total unrecognized compensation costs
    related to non-vested stock options and restricted stock awards
    is expected to be recognized over a weighted average period of
    2.8 years.
 
    Interest Income  Interest income was
    $1.7 million for the year ended December 31, 2008
    compared to $4.3 million for the year ended
    December 31, 2007. The decrease in interest income was
    primarily due to lower interest rates and lower average cash and
    cash equivalent balances in 2008 as compared to the same period
    in 2007.
 
    Net Loss  Net loss for the year ended
    December 31, 2008 was $48.7 million, or $0.61 per
    common share, compared to $23.9 million, or $0.32 per
    common share for the year ended December 31, 2007. The
    increase in net loss was primarily due to an increase in
    operating expenses, partially offset by increases in revenues.
 
    Comparison
    of Years Ended December 31, 2007 and 2006
 
    Revenues Under Collaborative
    Agreements  Revenues under collaborative
    agreements were approximately $3.2 million for the year
    ended December 31, 2007 compared to $311,000 for the year
    ended December 31, 2006. Revenues under collaborative
    agreements primarily consisted of the amortization of upfront
    fees received from Baxter and Roche of approximately
    $1.9 million and $81,000 in 2007 and 2006, respectively.
    Revenues under collaborative agreements also included
    reimbursements for research and development services from Baxter
    and Roche of $1.3 million and $230,000 in 2007 and 2006,
    respectively.
 
    Product Sales  Product sales were
    $640,000 for the year ended December 31, 2007 compared to
    $671,000 for the year ended December 31, 2006, a decrease
    of $31,000, or 5%. Cumulase product sales were $516,000 and
    
    31
 
    $342,000 in 2007 and 2006, respectively. Sales of the API for
    HYLENEX decreased by $205,000 resulting from the disposition by
    Baxter of short-dated HYLENEX vials in 2006.
 
    Cost of Sales  Cost of sales were
    $240,000 for the year ended December 31, 2007 compared to
    $437,000 for the year ended December 31, 2006, a decrease
    of $197,000, or 45%. The decrease was primarily due to the
    decrease in sales of the API for HYLENEX resulting from the
    disposition by Baxter of short-dated HYLENEX vials in 2006.
 
    Research and Development  Research and
    development expenses were $20.6 million for the year ended
    December 31, 2007 compared to $9.2 million for the
    year ended December 31, 2006. The increase of approximately
    $11.4 million was primarily due to the increase in
    outsourced research and development expenses of
    $6.2 million due to our various preclinical programs and
    the manufacturing
    scale-up of
    our rHuPH20 enzyme. In addition, compensation costs increased by
    $2.8 million, of which $238,000 related to share-based
    compensation. At December 31, 2007, our headcount for
    research and development functions totaled 56 employees,
    compared with 25 employees at December 31, 2006.
    Additionally, our facilities expenses increased by
    $1.3 million, research supplies and services expenses
    increased by $740,000 and depreciation expense increased by
    $281,000.
 
    Selling, General and Administrative 
    SG&A expenses were $11.2 million for the year ended
    December 31, 2007 compared to $6.9 million for the
    year ended December 31, 2006. The increase of approximately
    $4.3 million was primarily due to the increase in
    compensation costs of $2.5 million, of which
    $1.1 million related to share-based compensation. At
    December 31, 2007, our headcount for SG&A functions
    totaled 27 employees, compared with 11 employees at
    December 31, 2006. In addition, other increases included an
    increase in legal expenses, primarily related to intellectual
    property matters and collaborative agreements, of $554,000 and
    an increase in facilities expenses of $367,000.
 
    Share-Based Compensation  Total
    compensation cost for our share-based payments was
    $2.6 million for the year ended December 31, 2007
    compared to $1.3 million for the year ended
    December 31, 2006. Research and development expense
    included share-based compensation of approximately $663,000 and
    $424,000, respectively, for the years ended December 31,
    2007 and 2006. SG&A expenses included share-based
    compensation of approximately $1.9 million and $850,000,
    respectively, for the years ended December 31, 2007 and
    2006.
 
    Interest Income  Interest income was
    $4.3 million for the year ended December 31, 2007
    compared to $831,000 for the year ended December 31, 2006.
    The increase in interest income was due to higher average cash
    and cash equivalents balances during 2007.
 
    Net Loss  Net loss for the year ended
    December 31, 2007 was $23.9 million, or $0.32 per
    common share, compared to $14.8 million, or $0.24 per
    common share for the year ended December 31, 2006. The
    increase in net loss was primarily due to an increase in
    operating expenses, partially offset by increases in revenues
    and interest income.
 
    Liquidity
    and Capital Resources
 
    Our principal sources of liquidity are our existing cash and
    cash equivalents. As of December 31, 2008, we had cash and
    cash equivalents of approximately $63.7 million. We expect
    our cash requirements to increase as we continue to increase our
    research and development for, seek regulatory approvals of, and
    develop and manufacture our current product candidates. As we
    expand our research and development efforts and pursue
    additional product opportunities, we anticipate additional cash
    requirements for hiring of personnel, capital expenditures and
    investment in additional internal systems and infrastructure.
    The amount and timing of cash requirements will depend on the
    research, development, manufacture, regulatory and market
    acceptance of our product candidates, if any, and the resources
    we devote to researching, developing, manufacturing,
    commercializing and supporting our product candidates.
 
    We believe that our current cash and cash equivalents will be
    sufficient to fund our operations for at least the next twelve
    months. Currently, we anticipate net cash burn of approximately
    $30.0 to $35.0 million for the year ending
    December 31, 2009, depending on the progress of various
    preclinical and clinical programs, the timing of our
    manufacturing scale up and the achievement of various milestones
    under our existing collaborative agreements. We do not expect
    our revenues to be sufficient to fund operations for at least
    several years. We expect to fund our operations going forward
    with existing cash resources, anticipated revenues from our
    existing collaborations and
    
    32
 
    cash that we will raise through future transactions. We may
    finance future cash needs through any one of the following
    financing vehicles: (i) the public offering of securities;
    (ii) new collaborative agreements; (iii) expansions or
    revisions to existing collaborative relationships;
    (iv) private financings
    and/or
    (v) other equity or debt financings.
 
    In November 2008, we filed a shelf registration statement on
    Form S-3
    (Registration
    No. 333-155787)
    which initially allowed us, from time to time, to offer and sell
    up to $50.0 million of equity or debt securities. We cannot
    be certain that our existing cash and cash equivalents will be
    adequate for our anticipated needs or that additional financing
    will be available when needed or that, if available, financing
    will be obtained on terms favorable to us or our stockholders.
    Having insufficient funds will require us to delay, scale back
    or eliminate some or all of our research and development
    programs or delay the launch of our product candidates. If we
    raise additional funds by issuing equity securities, substantial
    dilution to existing stockholders could result. If we raise
    additional funds by incurring debt financing, the terms of the
    debt may involve significant cash payment obligations as well as
    covenants and specific financial ratios that may restrict our
    ability to operate our business.
 
    Operating
    Activities
 
    Net cash used in operations was $35.4 million during the
    year ended December 31, 2008 compared to $148,000 of net
    cash used in operations during the year ended December 31,
    2007. This change was primarily due to increased operating
    expenses of approximately $27.2 million as well as reduced
    receipts from partnership payments of approximately
    $10.2 million during 2008 as compared to 2007.
 
    Net cash used in operations was $148,000 during the year ended
    December 31, 2007 compared to $7.1 million of cash
    provided by operations during the year ended December 31,
    2006. This change was primarily due to the $9.1 million
    increase in the total net loss for 2007 as compared to 2006.
 
    Investing
    Activities
 
    Net cash used in investing activities was $1.2 million
    during the year ended December 31, 2008 compared to
    $2.4 million during the year ended December 31, 2007.
    This was primarily due to a decrease in purchases of property
    and equipment during 2008.
 
    Net cash used in investing activities was $2.4 million
    during the year ended December 31, 2007 compared to
    $365,000 during the year ended December 31, 2006. This was
    due to an increase in purchases of property and equipment during
    2007.
 
    Financing
    Activities
 
    Net cash provided by financing activities was $2.6 million
    during the year ended December 31, 2008 compared to
    $56.0 million during the year ended December 31, 2007.
    Net cash provided by financing activities during 2008 primarily
    consisted of proceeds from warrant and stock option exercises.
    Net cash provided by financing activities during 2007 primarily
    consisted of approximately $52.0 million in proceeds, net
    of issuance costs, from sales of our common stock and
    approximately $4.0 million in proceeds from warrant and
    stock option exercises.
 
    Net cash provided by financing activities was $56.0 million
    during the year ended December 31, 2007 versus
    $18.3 million during the year ended December 31, 2006.
    Net cash provided by financing activities during 2006 primarily
    consisted of approximately $11.0 million in proceeds, net
    of issuance costs, from sales of our common stock and
    approximately $7.3 million in proceeds from warrant and
    stock option exercises.
 
    Off-Balance Sheet Arrangements  As of
    December 31, 2008, we did not have any relationships with
    unconsolidated entities or financial partnerships, such as
    entities often referred to as structured finance or special
    purpose entities, which would have been established for the
    purpose of facilitating off-balance sheet arrangements or other
    contractually narrow or limited purposes. In addition, we did
    not engage in trading activities involving non-exchange traded
    contracts. As such, we are not materially exposed to any
    financing, liquidity, market or credit risk that could arise if
    we had engaged in these relationships.
    
    33
 
    Contractual Obligations  As of
    December 31, 2008, future minimum payments due under our
    contractual obligations are as follows:
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | Payments Due by Period |  | 
|  |  |  |  |  | Less than 
 |  |  |  |  |  |  |  |  | More than 
 |  | 
| 
    Contractual Obligations:
 |  | Total |  |  | 1 Year |  |  | 1-3 Years |  |  | 4-5 Years |  |  | 5 Years |  | 
|  | 
| 
    Operating leases
 |  | $ | 9,945,275 |  |  | $ | 2,350,130 |  |  | $ | 4,936,207 |  |  | $ | 2,658,938 |  |  | $ |  |  | 
| 
    License payments
 |  |  | 2,435,000 |  |  |  | 480,000 |  |  |  | 610,000 |  |  |  | 610,000 |  |  |  | 735,000 |  | 
| 
    Purchase obligations(1)
 |  |  | 15,352,737 |  |  |  | 15,352,737 |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Total
 |  | $ | 27,733,012 |  |  | $ | 18,182,867 |  |  | $ | 5,546,207 |  |  | $ | 3,268,938 |  |  | $ | 735,000 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
 
 
    |  |  |  | 
    | (1) |  | Purchase obligations include outstanding purchase orders for
    outsourced research and development services for our various
    preclinical and clinical programs, for the manufacturing of our
    products for clinical and commercial use and other recurring
    purchases and services made in the normal course of business. | 
 
    As of December 31, 2008, we had no long-term debt or
    capital lease obligations.
 
    Our future capital uses and requirements depend on numerous
    forward-looking factors. These factors may include, but are not
    limited to, the following:
 
    |  |  |  | 
    |  |  | the rate of progress and cost of research and development
    activities; | 
|  | 
    |  |  | the number and scope of our research activities; | 
|  | 
    |  |  | the costs of filing, prosecuting, defending and enforcing any
    patent claims and other intellectual property rights; | 
|  | 
    |  |  | our ability to establish and maintain product discovery and
    development collaborations; | 
|  | 
    |  |  | the effect of competing technological and market developments; | 
|  | 
    |  |  | the terms and timing of any collaborative, licensing and other
    arrangements that we may establish; and | 
|  | 
    |  |  | the extent to which we acquire or in-license new products,
    technologies or businesses. | 
 
    Recent
    Accounting Pronouncements
 
    See Note 2, Summary of Significant Accounting
    Policies  Pending Adoption of Recent Accounting
    Pronouncements, in the Notes to Consolidated Financial
    Statements for a discussion of recent accounting pronouncements
    and their effect, if any, on the Company.
 
    |  |  | 
    | Item 7A. | Quantitative
    and Qualitative Disclosures About Market Risk | 
 
    Our primary exposure to market risk is interest income
    sensitivity, which is affected by changes in the general level
    of U.S. interest rates, particularly because the majority
    of our investments are in short-term marketable securities. The
    primary objective of our investment activities is to preserve
    principal while at the same time maximizing the income we
    receive from our investments without significantly increasing
    risk. Some of the securities that we invest in may be subject to
    market risk. This means that a change in prevailing interest
    rates may cause the value of the investment to fluctuate. For
    example, if we purchase a security that was issued with a fixed
    interest rate and the prevailing interest rate later rises, the
    value of our investment will probably decline. To minimize this
    risk, we intend to continue to maintain our portfolio of cash
    equivalents and short-term investments in a variety of
    securities including commercial paper, money market funds and
    government and non-government debt securities. In general, money
    market funds are not subject to market risk because the interest
    paid on such funds fluctuates with the prevailing interest rate.
    As of December 31, 2008, we did not have any holdings of
    derivative financial or commodity instruments, or any foreign
    currency denominated transactions, and all of our cash and cash
    equivalents were in money market mutual funds and other
    investments that we believe to be highly liquid.
    
    34
 
    |  |  | 
    | Item 8. | Financial
    Statements and Supplementary Data | 
 
    Our financial statements are annexed to this report beginning on
    page F-1.
 
    |  |  | 
    | Item 9. | Changes
    In and Disagreements with Accountants on Accounting and
    Financial Disclosure | 
 
    None.
 
    |  |  | 
    | Item 9A. | Controls
    and Procedures | 
 
    Evaluation
    of Disclosure Controls and Procedures
 
    We maintain disclosure controls and procedures that are designed
    to ensure that information required to be disclosed in our
    Exchange Act reports is recorded, processed, summarized and
    reported within the timelines specified in the Securities and
    Exchange Commissions rules and forms, and that such
    information is accumulated and communicated to our management,
    including our Chief Executive Officer and Chief Financial
    Officer, as appropriate, to allow timely decision regarding
    required disclosure. In designing and evaluating the disclosure
    controls and procedures, management recognized that any controls
    and procedures, no matter how well designed and operated, can
    only provide reasonable assurance of achieving the desired
    control objectives, and in reaching a reasonable level of
    assurance, management necessarily was required to apply its
    judgment in evaluating the cost-benefit relationship of possible
    controls and procedures.
 
    Under the supervision and with the participation of our
    management, including our principal executive officer and
    principal financial officer, we conducted an evaluation of our
    disclosure controls and procedures, as such term is defined
    under
    Rule 13a-15(e)
    promulgated under the Securities Exchange Act of 1934, as
    amended. Based on this evaluation, our principal executive
    officer and our principal financial officer concluded that our
    disclosure controls and procedures were effective as of the end
    of the period covered by this Annual Report on
    Form 10-K.
 
    Changes
    in Internal Control Over Financial Reporting
 
    There have been no significant changes in our internal control
    over financial reporting that occurred during the quarter ended
    December 31, 2008, that have materially affected, or are
    reasonably likely to materially affect our internal control over
    financial reporting.
 
    Managements
    Report on Internal Control Over Financial Reporting
 
    Our management is responsible for establishing and maintaining
    adequate internal control over financial reporting. Internal
    control over financial reporting is defined in
    Rule 13a-15(f)
    and
    Rule 15d-15(f)
    promulgated under the Securities Exchange Act of 1934 as a
    process designed by, or under the supervision of, our principal
    executive and principal financial officers and effected by our
    board of directors, management and other personnel, to provide
    reasonable assurance regarding the reliability of financial
    reporting and the preparation of financial statements for
    external purposes in accordance with generally accepted
    accounting principles and includes those policies and procedures
    that:
 
    |  |  |  | 
    |  |  | Pertain to the maintenance of records that in reasonable detail
    accurately and fairly reflect the transactions and dispositions
    of our assets; | 
|  | 
    |  |  | Provide reasonable assurance that transactions are recorded as
    necessary to permit preparation of financial statements in
    accordance with generally accepted accounting principles, and
    that receipts and expenditures are being made only in accordance
    with authorizations of our management and directors; and | 
|  | 
    |  |  | Provide reasonable assurance regarding prevention or timely
    detection of unauthorized acquisition, use or disposition of our
    assets that could have a material effect on our financial
    statements. | 
    
    35
 
 
    Because of its inherent limitations, internal control over
    financial reporting may not prevent or detect misstatements.
    Projections of any evaluation of effectiveness to future periods
    are subject to the risk that controls may become inadequate
    because of changes in conditions, or that the degree of
    compliance with the policies or procedures may deteriorate.
 
    Our management assessed the effectiveness of our internal
    control over financial reporting as of December 31, 2008.
    In making this assessment, our management used the criteria set
    forth by the Committee of Sponsoring Organizations of the
    Treadway Commission (COSO) in Internal Control-Integrated
    Framework.
 
    Based on our assessment, management concluded that, as of
    December 31, 2008, our internal control over financial
    reporting is effective based on those criteria.
 
    The independent registered public accounting firm that audited
    the consolidated financial statements that are included in this
    Annual Report on
    Form 10-K
    has issued an audit report on the effectiveness of our internal
    control over financial reporting as of December 31, 2008.
    The report appears below.
    
    36
 
    Report of
    Independent Registered Public Accounting Firm
 
    The Board of Directors and Stockholders
    Halozyme Therapeutics, Inc.
 
    We have audited Halozyme Therapeutics, Inc.s internal
    control over financial reporting as of December 31, 2008,
    based on criteria established in Internal Control 
    Integrated Framework issued by the Committee of Sponsoring
    Organizations of the Treadway Commission (the COSO criteria).
    Halozyme Therapeutics, Inc.s management is responsible for
    maintaining effective internal control over financial reporting
    and for its assessment of the effectiveness of internal control
    over financial reporting included in the accompanying
    Managements Report on Internal Control Over Financial
    Reporting. Our responsibility is to express an opinion on the
    companys internal control over financial reporting based
    on our audit.
 
    We conducted our audit in accordance with the standards of the
    Public Company Accounting Oversight Board (United States). Those
    standards require that we plan and perform the audit to obtain
    reasonable assurance about whether effective internal control
    over financial reporting was maintained in all material
    respects. Our audit included obtaining an understanding of
    internal control over financial reporting, assessing the risk
    that a material weakness exists, testing and evaluating the
    design and operating effectiveness of internal control based on
    the assessed risk, and performing such other procedures as we
    considered necessary in the circumstances. We believe that our
    audit provides a reasonable basis for our opinion.
 
    A companys internal control over financial reporting is a
    process designed to provide reasonable assurance regarding the
    reliability of financial reporting and the preparation of
    financial statements for external purposes in accordance with
    generally accepted accounting principles. A companys
    internal control over financial reporting includes those
    policies and procedures that (1) pertain to the maintenance
    of records that, in reasonable detail, accurately and fairly
    reflect the transactions and dispositions of the assets of the
    company; (2) provide reasonable assurance that transactions
    are recorded as necessary to permit preparation of financial
    statements in accordance with generally accepted accounting
    principles, and that receipts and expenditures of the company
    are being made only in accordance with authorizations of
    management and directors of the company; and (3) provide
    reasonable assurance regarding prevention or timely detection of
    unauthorized acquisition, use, or disposition of the
    companys assets that could have a material effect on the
    financial statements.
 
    Because of its inherent limitations, internal control over
    financial reporting may not prevent or detect misstatements.
    Also, projections of any evaluation of effectiveness to future
    periods are subject to the risk that controls may become
    inadequate because of changes in conditions, or that the degree
    of compliance with the policies or procedures may deteriorate.
 
    In our opinion, Halozyme Therapeutics, Inc. maintained, in all
    material respects, effective internal control over financial
    reporting as of December 31, 2008, based on the COSO
    criteria.
 
    We also have audited, in accordance with the standards of the
    Public Company Accounting Oversight Board (United States), the
    consolidated balance sheets of Halozyme Therapeutics, Inc. as of
    December 31, 2008 and 2007, and the related consolidated
    statements of operations, cash flows and stockholders
    equity for each of the three years in the period ended
    December 31, 2008 and our report dated March 11, 2009
    expressed an unqualified opinion thereon.
 
 
    San Diego, California
    March 11, 2009
    
    37
 
    |  |  | 
    | Item 9B. | Other
    Information | 
 
    None.
 
    PART III
 
    |  |  | 
    | Item 10. | Directors,
    Executive Officers and Corporate Governance | 
 
    The information required by this item regarding directors is
    incorporated by reference to our Definitive Proxy Statement (the
    Proxy Statement) to be filed with the Securities and
    Exchange Commission in connection with our 2009 Annual Meeting
    of Stockholders under the heading Election of
    Directors. The information required by this item regarding
    compliance with Section 16(a) of the Securities Exchange
    Act of 1934, as amended, is incorporated by reference to the
    information under the caption Compliance with
    Section 16(a) of the Exchange Act to be contained in
    the Proxy Statement. The information required by this item
    regarding our code of ethics is incorporated by reference to the
    information under the caption Code of Conduct and
    Ethics to be contained in our Proxy Statement. The
    information required by this item regarding our audit committee
    is incorporated by reference to the information under the
    caption Board Meetings and Committees - Audit
    Committee to be contained in our Proxy Statement.
 
    Executive
    Officers
 
    Jonathan E. Lim, M.D. (37), President, Chief
    Executive Officer and Director. Dr. Lim became employee
    number five when he joined Halozyme in May 2003 as President and
    CEO. He was elected to the Board of Directors in October 2003
    and served as Chairman from April 2004 to December 2005. Under
    Dr. Lims leadership, Halozyme has raised over
    $180 million from financings and corporate partnerships,
    signed major alliances with Roche and Baxter, received two FDA
    approvals, for HYLENEX and Cumulase, and transitioned into a
    NASDAQ listed company with approximately 130 employees.
    From 2001 to 2003, Dr. Lim was a management consultant at
    McKinsey & Company, where he specialized in the health
    care industry, serving a wide range of companies from
    start-ups to
    Fortune 500 multinationals in the biopharmaceutical, medical
    products and payor/provider segments. From 1999 to 2001,
    Dr. Lim was a National Institutes of Health Postdoctoral
    Fellow conducting clinical outcomes research at Harvard Medical
    School. Dr. Lims professional experience also
    includes clinical training in general surgery at the New York
    Hospital-Cornell Medical Center and Memorial Sloan-Kettering
    Cancer Center; Founder and President of a health care technology
    start-up;
    Founding
    Editor-in-Chief
    of the McGill Journal of Medicine; basic science and clinical
    research at the Salk Institute for Biological Studies and the
    Massachusetts Eye and Ear Infirmary; and membership on the
    strategic planning committee of the American Medical Association
    from 2002 to 2005. Dr. Lim earned his B.S., with honors,
    and M.S. in molecular biology from Stanford University, his M.D.
    from McGill University and his M.P.H. in health care management
    from Harvard University.
 
    Gregory I. Frost, Ph.D. (37), Vice President, Chief
    Scientific Officer and Director. Dr. Frost co-founded
    Halozyme in 1999 and has spent more than fourteen years
    conducting research on the hyaluronidase family of enzymes. From
    1998 to 1999, he was a Senior Research Scientist at the Sidney
    Kimmel Cancer Center (SKCC), where he focused much of his work
    on developing the hyaluronidase technology. Prior to SKCC, his
    research in the Department of Pathology at the University of
    California, San Francisco, led directly to the
    purification, cloning and characterization of the human
    hyaluronidase gene family and the discovery of several metabolic
    disorders. He has authored multiple scientific peer-reviewed and
    invited articles in the hyaluronidase field and is an inventor
    on several key patents. Dr. Frosts prior experience
    includes serving as a scientific consultant to a number of
    biopharmaceutical companies, including Q-Med AB, BioPhausia AB
    and Active Biotech AB. Dr. Frost is registered to practice
    before the U.S. Patent and Trademark Office and earned his
    B.A. in biochemistry and molecular biology from the University
    of California, Santa Cruz, and his Ph.D. in the Department of
    Pathology at the University of California, San Francisco,
    where he was an Achievement Rewards for College Scientists
    Scholar.
 
    David A. Ramsay, MBA (44), Vice President, Chief
    Financial Officer. Mr. Ramsay joined Halozyme in 2003. He
    has over 20 years of corporate financial experience
    spanning several industries. From 2000 to 2003, he was Vice
    President, Chief Financial Officer of Lathian Systems, a
    provider of technology-based sales solutions for the life
    sciences industry. Prior to Lathian, Mr. Ramsay was Vice
    President, Treasurer of ICN Pharmaceuticals, now called
    
    38
 
    Valeant Pharmaceuticals International, a multinational,
    specialty pharmaceutical company. Mr. Ramsay joined ICN in
    1998 from ARCO, where he spent four years in various financial
    roles, most recently serving as Manager of Financial
    Planning & Analysis for the companys
    1,700-station West Coast Retail Marketing Network. Prior to
    ARCO, he served as Vice President, Controller for Security
    Pacific Asian Bank, a subsidiary of Security Pacific
    Corporation. He began his career as an auditor at
    Deloitte & Touche, where he obtained his CPA license.
    Mr. Ramsay served as Chairman of the Audit Committee and on
    the Board of Directors for Axxora Life Sciences, Inc., a
    privately held, worldwide research reagent company which was
    acquired by Enzo Biochem in 2007. Mr. Ramsay graduated from
    the University of California, Berkeley, with a B.S. in business
    administration and earned his M.B.A. with a dual major in
    finance and strategic management from The Wharton School at the
    University of Pennsylvania.
 
    Robert L. Little (59), Vice President, Chief Commercial
    Officer. Mr. Little joined Halozyme in 2006 with extensive
    experience in the pharmaceutical industry in general management,
    commercial operations, sales and marketing and business
    development. From 2003 to 2006, Mr. Little was Senior Vice
    President of Commercial Operations at Neurocrine Biosciences,
    where he was responsible for building and managing the sales and
    marketing functions. During his tenure, Mr. Little put in
    place a fully integrated commercial organization, including a
    marketing team, a
    200-person
    CNS sales force and full logistical and infrastructure support
    in order to co-detail
    Zoloft®
    with Pfizer and in preparation for the introduction of
    Indiplon®.
    From 1985 to 2003, Mr. Little was at Pharmacia, Inc. where
    his most recent position was Group Vice President, Diversified
    Products. His responsibilities included managing
    Pharmacias Diversified Products business, as well as
    forming a new global business unit merging pricing,
    reimbursement and health outcomes groups to focus on current
    industry issues, pricing and drug values. From 1999 to 2001,
    Mr. Little was Group Vice President, Specialty Products and
    worldwide head of a $2.5 billion, global specialty products
    business (ophthalmology, endocrinology, neurology and others).
    Mr. Little previously held a number of positions within
    Pharmacia, including President and Managing Director of
    Pharmacia in Milan, Italy, President of Pharmacia &
    UpJohn in Canada and President of Pharmacia, Inc. in Canada.
    Prior to joining Pharmacia, he held positions at Adria
    Laboratories and Miles Laboratories/Bayer AG in the U.K., Italy,
    and the U.S. Mr. Little earned his degree in economics
    and finance from the West London Business School, Ealing
    Technical College.
 
    William J. Fallon (52), Vice President,
    Manufacturing & Operations. Mr. Fallon joined
    Halozyme in 2006 as Vice President, Manufacturing &
    Operations. His responsibilities include oversight of all
    aspects of internal and external manufacturing and facilities
    operations, as well as bioprocess development. Prior to
    Halozyme, he served as President and Chief Executive Officer of
    Cytovance Biologics, a contract manufacturing organization that
    provides manufacturing and development services to the
    biotechnology industry. From 2001 to 2003, he was Vice President
    of Technical Operations at Genzyme Corporation, having held the
    same position at Novazyme Pharmaceuticals, Inc. prior to its
    acquisition by Genzyme in 2001. Mr. Fallon joined Novazyme
    from Transkaryotic Therapies, where he was Vice President of
    Manufacturing from 1998 to 2001. From 1993 to 1998, he was
    employed in several management positions for the Ares-Serono
    Group, including Vice President, U.S. Manufacturing
    Operations. In this role, he served as general manager,
    overseeing the production and distribution of all of
    Seronos approved biotechnology products in the
    U.S. From 1990 to 1992, he was Director of Manufacturing
    for Centocor, Inc. His prior experience also includes various
    management and operational roles at Invitron Corporation and
    Travenol-Genentech Diagnostics. Mr. Fallon earned a B.S. in
    marine science and a B.A. in biology from Long Island
    University, and an M.S. in biology from Northeastern University.
 
    |  |  | 
    | Item 11. | Executive
    Compensation | 
 
    The information required by this item is incorporated by
    reference to the information under the caption Executive
    Compensation to be contained in the Proxy Statement.
    
    39
 
    |  |  | 
    | Item 12. | Security
    Ownership of Certain Beneficial Owners and Management and
    Related Stockholder Matters | 
 
    The information required by this item is incorporated by
    reference to the information under the caption Security
    Ownership of Certain Beneficial Owners and Management and
    Related Stockholder Matters to be contained in the Proxy
    Statement.
 
    |  |  | 
    | Item 13. | Certain
    Relationships and Related Transactions, and Director
    Independence | 
 
    The information required by this item is incorporated by
    reference to the information under the caption Certain
    Relationships and Related Transactions, and Director
    Independence to be contained in the Proxy Statement.
 
    |  |  | 
    | Item 14. | Principal
    Accounting Fees and Services | 
 
    The information required by this item is incorporated by
    reference to the information under the caption Principal
    Accounting Fees and Services contained in the Proxy
    Statement.
    
    40
 
 
 
    PART IV
 
    |  |  | 
    | Item 15. | Exhibits
    and Financial Statement Schedules | 
 
    (a) Documents
    filed as part of this report.
 
    1. Financial Statements:
    |  |  |  |  |  | 
|  |  | Page | 
|  | 
|  |  |  | F-1 |  | 
|  |  |  | F-2 |  | 
|  |  |  | F-3 |  | 
|  |  |  | F-4 |  | 
|  |  |  | F-5 |  | 
|  |  |  | F-6 |  | 
 
    2. List of all Financial Statement schedules. All schedules
    are omitted because they are not applicable or the required
    information is shown in the Financial Statements or notes
    thereto.
 
    3. List of Exhibits required by Item 601 of
    Regulation S-K.
    See part (b) below.
 
    (b) Exhibits:
 
    |  |  |  |  |  | 
|  | 2 | .1 |  | Agreement and Plan of Merger, dated November 14, 2007, by
    and between the Registrant and the Registrants predecessor
    Nevada corporation(1) | 
|  | 3 | .1 |  | Amended and Restated Certificate of Incorporation, as filed with
    the Delaware Secretary of State on October 7, 2007(2) | 
|  | 3 | .2 |  | Certificate of Designation, Preferences and Rights of the terms
    of the Series A Preferred Stock(1) | 
|  | 3 | .3 |  | Bylaws(2) | 
|  | 4 | .1 |  | Amended Rights Agreement between Corporate Stock Transfer, as
    rights agent, and Registrant, dated November 12, 2007(20) | 
|  | 10 | .1 |  | License Agreement between University of Connecticut and
    Registrant, dated November 15, 2002(3) | 
|  | 10 | .2 |  | First Amendment to the License Agreement between University of
    Connecticut and Registrant, dated January 9, 2006(9) | 
|  | 10 | .3* |  | Commercial Supply Agreement with Avid Bioservices, Inc. and
    Registrant, dated February 16, 2005(7) | 
|  | 10 | .4* |  | First Amendment to the Commercial Supply Agreement between Avid
    Bioservices, Inc. and Registrant, dated December 15,
    2006(14) | 
|  | 10 | .5* |  | Clinical Supply Agreement between Cook Pharmica, LLC and
    Registrant, dated August 15, 2008(24) | 
|  | 10 | .6 |  | Form of Common Stock Purchase Warrant(5) | 
|  | 10 | .7# |  | DeliaTroph Pharmaceuticals, Inc. 2001 Amended and Restated Stock
    Plan and form of Stock Option Agreements for options assumed
    thereunder(6) | 
|  | 10 | .8 |  | Nonstatutory Stock Option Agreement With Andrew Kim(6) | 
|  | 10 | .9# |  | 2004 Stock Plan and Form of Option Agreement thereunder(4) | 
|  | 10 | .10# |  | Halozyme Therapeutics, Inc. 2005 Outside Directors Stock
    Plan(8) | 
|  | 10 | .11# |  | Form of Stock Option Agreement (2005 Outside Directors
    Stock Plan)(12) | 
|  | 10 | .12# |  | Form of Restricted Stock Agreement (2005 Outside Directors
    Stock Plan)(12) | 
|  | 10 | .13# |  | Halozyme Therapeutics, Inc. 2006 Stock Plan(11) | 
|  | 10 | .14# |  | Form of Stock Option Agreement (2006 Stock Plan)(12) | 
|  | 10 | .15# |  | Form of Restricted Stock Agreement (2006 Stock Plan)(12) | 
|  | 10 | .16# |  | Halozyme Therapeutics, Inc. 2008 Stock Plan(21) | 
    
    41
 
    |  |  |  |  |  | 
|  | 10 | .17# |  | Halozyme Therapeutics, Inc. 2008 Outside Directors Stock
    Plan(21) | 
|  | 10 | .18# |  | Form of Indemnity Agreement for Directors and Executive
    Officers(19) | 
|  | 10 | .19# |  | Outside Director Compensation Plan(23) | 
|  | 10 | .20# |  | 2007 Senior Executive Incentive Plan(23) | 
|  | 10 | .21# |  | 2008 Senior Executive Incentive Structure(22) | 
|  | 10 | .22# |  | 2009 Senior Executive Incentive Plan(25) | 
|  | 10 | .23# |  | Change in Control Policy(22) | 
|  | 10 | .24# |  | Severance Policy(23) | 
|  | 10 | .25* |  | Amended and Restated Exclusive Distribution Agreement between
    Baxter Healthcare Corporation, Baxter Healthcare S.A. and
    Registrant, dated February 14, 2007(15) | 
|  | 10 | .26* |  | Amended and Restated Development and Supply Agreement between
    Baxter Healthcare Corporation, Baxter Healthcare S.A. and
    Registrant, dated February 14, 2007(15) | 
|  | 10 | .27* |  | License and Collaboration Agreement between Baxter Healthcare
    Corporation, Baxter Healthcare S.A. and Registrant, dated
    February 14, 2007(15) | 
|  | 10 | .28* |  | Enhanze Technology License and Collaboration Agreement between
    Baxter Healthcare Corporation, Baxter Healthcare S.A. and
    Registrant, dated September 7, 2007(18) | 
|  | 10 | .29* |  | License and Collaboration Agreement between F.
    Hoffmann-La Roche Ltd, Hoffmann-La Roche Inc. and
    Registrant dated December 5, 2006(13) | 
|  | 10 | .30 |  | Stock Purchase Agreement between New River Management V, LP
    and Registrant, dated April 23, 2007(16) | 
|  | 10 | .31 |  | Sublease Agreement (11404 Sorrento Valley Road), effective as of
    July 2, 2007(17) | 
|  | 10 | .32 |  | Sublease Agreement (11388 Sorrento Valley Road), effective as of
    July 2, 2007(17) | 
|  | 10 | .33 |  | Standard Industrial Net Lease (11388 Sorrento Valley Road),
    effective as of July 26, 2007(17) | 
|  | 21 | .1 |  | Subsidiaries of Registrant(10) | 
|  | 23 | .1 |  | Consent of Independent Registered Public Accounting Firm | 
|  | 31 | .1 |  | Certification of Chief Executive Officer pursuant to
    Rule 13a-14(a)
    and 15d-14(a) of the Securities Exchange Act of 1934, as amended | 
|  | 31 | .2 |  | Certification of Chief Financial Officer pursuant to
    Rule 13a-14(a)
    and 15d-14(a) of the Securities Exchange Act of 1934, as amended | 
|  | 32 |  |  | Certification of Chief Executive Officer and Chief Financial
    Officer pursuant to 18 U.S.C. 1350, as adopted pursuant to
    Section 906 of the Sarbanes-Oxley Act of 2002 | 
 
 
    |  |  |  | 
    | (1) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K,
    filed November 20, 2007. | 
|  | 
    | (2) |  | Incorporated by reference to the Registrants definitive
    proxy statement filed with the SEC on Form DEF14A on
    October 11, 2007. | 
|  | 
    | (3) |  | Incorporated by reference to the Registrants Registration
    Statement on
    Form SB-2
    filed with the Commission on April 23, 2004. | 
|  | 
    | (4) |  | Incorporated by reference to the Registrants amendment
    number two to the Registration Statement on
    Form SB-2
    filed with the Commission on July 23, 2004. | 
|  | 
    | (5) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K,
    filed October 15, 2004. | 
|  | 
    | (6) |  | Incorporated by reference to the Registrants Registration
    Statement on
    Form S-8
    filed with the Commission on October 26, 2004. | 
|  | 
    | (7) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K,
    filed February 22, 2005. | 
|  | 
    | (8) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K,
    filed July 6, 2005. | 
|  | 
    | (9) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K,
    filed January 12, 2006. | 
|  | 
    | (10) |  | Incorporated by reference to the Registrants Annual Report
    on
    Form 10-KSB/A,
    filed March 29, 2005. | 
|  | 
    | (11) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K,
    filed March 24, 2006. | 
    42
 
 
    |  |  |  | 
    | (12) |  | Incorporated by reference to the Registrants Quarterly
    Report on
    Form 10-Q,
    filed August 8, 2006. | 
|  | 
    | (13) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K/A,
    filed December 15, 2006. | 
|  | 
    | (14) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K,
    filed December 21, 2006. | 
|  | 
    | (15) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K/A,
    filed February 20, 2007. | 
|  | 
    | (16) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K,
    filed April 24, 2007. | 
|  | 
    | (17) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K,
    filed July 31, 2007. | 
|  | 
    | (18) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K,
    filed September 12, 2007. | 
|  | 
    | (19) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K,
    filed December 20, 2007. | 
|  | 
    | (20) |  | Incorporated by reference to the Registrants Annual Report
    on
    Form 10-K,
    filed March 14, 2008. | 
|  | 
    | (21) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K,
    filed March 19, 2008. | 
|  | 
    | (22) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K,
    filed April 21, 2008. | 
|  | 
    | (23) |  | Incorporated by reference to the Registrants Quarterly
    Report on
    Form 10-Q,
    filed May 9, 2008. | 
|  | 
    | (24) |  | Incorporated by reference to the Registrants Quarterly
    Report on
    Form 10-Q,
    filed November 7, 2008. | 
|  | 
    | (25) |  | Incorporated by reference to the Registrants Current
    Report on
    Form 8-K,
    filed February 9, 2009. | 
|  | 
    | * |  | Confidential treatment has been requested for certain portions
    of this exhibit. These portions have been omitted from this
    agreement and have been filed separately with the Securities and
    Exchange Commission. | 
|  | 
    | # |  | Indicates management contract or compensatory plan or
    arrangement. | 
 
    (c) Financial Statement Schedules.  See
    Item 15(a)2 above.
    
    43
 
 
    SIGNATURES
 
    Pursuant to the requirements of the Securities Exchange Act of
    1934, the Registrant has duly caused this report to be signed on
    its behalf by the undersigned in the City of San Diego, on
    March 13, 2009.
 
    Halozyme Therapeutics, Inc.,
    a Delaware corporation
 
    |  |  |  | 
    |  | By: | /s/  Jonathan
    E. Lim, M.D. | 
    Jonathan E. Lim, M.D.
    President and Chief Executive Officer
 
    Date: March 13, 2009
 
    POWER OF
    ATTORNEY
 
    Know all persons by these presents, that each person whose
    signature appears below constitutes and appoints Jonathan E. Lim
    and David A. Ramsay, and each of them, as his true and lawful
    attorneys-in-fact and agents, with full power of substitution
    and resubstitution, for him and in his name, place, and stead,
    in any and all capacities, to sign any and all amendments to
    this Annual Report, and to file the same, with all exhibits
    thereto, and other documents in connection therewith, with the
    Securities and Exchange Commission, granting unto said
    attorneys-in-fact and agents, and each of them, full power and
    authority to do and perform each and every act and thing
    requisite and necessary to be done in connection therewith, as
    fully to all intents and purposes as he might or could do in
    person, hereby ratifying and confirming that all said
    attorneys-in-fact and agents, or any of them or their or his
    substitute or substituted, may lawfully do or cause to be done
    by virtue thereof.
 
    Pursuant to the requirements of the Securities Act of 1933, as
    amended, this Annual Report has been signed by the following
    persons in the capacities and on the dates indicated.
 
    |  |  |  |  |  |  |  | 
| 
    Signature
 |  | 
    Title
 |  | 
    Date
 | 
|  | 
|  |  |  |  |  | 
| /s/  Jonathan
    E. Lim, M.D. Jonathan
    E. Lim, M.D.
 |  | President and Chief Executive Officer (Principal Executive
    Officer), Director |  | March 13, 2009 | 
|  |  |  |  |  | 
| /s/  David
    A. Ramsay David
    A. Ramsay
 |  | Secretary and Chief Financial Officer (Principal Financial and
    Accounting Officer) |  | March 13, 2009 | 
|  |  |  |  |  | 
| /s/  Gregory
    I. Frost, Ph.D. Gregory
    I. Frost, Ph.D.
 |  | Vice President and Chief Scientific Officer, Director |  | March 13, 2009 | 
|  |  |  |  |  | 
| /s/  Kenneth
    J. Kelley Kenneth
    J. Kelley
 |  | Chairman of the Board of Directors |  | March 13, 2009 | 
|  |  |  |  |  | 
| /s/  Kathryn
    E. Falberg Kathryn
    E. Falberg
 |  | Director |  | March 13, 2009 | 
|  |  |  |  |  | 
| /s/  Randal
    J. Kirk Randal
    J. Kirk
 |  | Director |  | March 13, 2009 | 
    
    44
 
    |  |  |  |  |  |  |  | 
| 
    Signature
 |  | 
    Title
 |  | 
    Date
 | 
|  | 
|  |  |  |  |  | 
| /s/  Connie
    L. Matsui Connie
    L. Matsui
 |  | Director |  | March 13, 2009 | 
|  |  |  |  |  | 
| /s/  John
    S. Patton, Ph.D. John
    S. Patton, Ph.D.
 |  | Director |  | March 13, 2009 | 
|  |  |  |  |  | 
| /s/  Steven
    T. Thornton Steven
    T. Thornton
 |  | Director |  | March 13, 2009 | 
    
    45
 
 
    Report of
    Independent Registered Public Accounting Firm
 
    The Board of Directors and Stockholders
    Halozyme Therapeutics, Inc.
 
    We have audited the accompanying consolidated balance sheets of
    Halozyme Therapeutics, Inc. as of December 31, 2008 and
    2007, and the related consolidated statements of operations,
    cash flows and stockholders equity for each of the three
    years in the period ended December 31, 2008. These
    financial statements are the responsibility of the
    Companys management. Our responsibility is to express an
    opinion on these financial statements based on our audits.
 
    We conducted our audits in accordance with the standards of the
    Public Company Accounting Oversight Board (United States). Those
    standards require that we plan and perform the audit to obtain
    reasonable assurance about whether the financial statements are
    free of material misstatement. An audit includes examining, on a
    test basis, evidence supporting the amounts and disclosures in
    the financial statements. An audit also includes assessing the
    accounting principles used and significant estimates made by
    management, as well as evaluating the overall financial
    statement presentation. We believe that our audits provide a
    reasonable basis for our opinion.
 
    In our opinion, the financial statements referred to above
    present fairly, in all material respects, the consolidated
    financial position of Halozyme Therapeutics, Inc. at
    December 31, 2008 and 2007, and the consolidated results of
    its operations and its cash flows for each of the three years in
    the period ended December 31, 2008, in conformity with
    U.S. generally accepted accounting principles.
 
    We also have audited, in accordance with the standards of the
    Public Company Accounting Oversight Board (United States),
    Halozyme Therapeutics, Inc.s internal control over
    financial reporting as of December 31, 2008, based on
    criteria established in Internal Control  Integrated
    Framework issued by the Committee of Sponsoring Organizations of
    the Treadway Commission and our report dated March 11, 2009
    expressed an unqualified opinion thereon.
 
 
    San Diego, California
    March 11, 2009
    
    F-1
 
    HALOZYME
    THERAPEUTICS, INC.
    
 
 
    |  |  |  |  |  |  |  |  |  | 
|  |  | December 31, |  | 
|  |  | 2008 |  |  | 2007 |  | 
|  | 
| 
    ASSETS
 | 
| 
    Current assets:
 |  |  |  |  |  |  |  |  | 
| 
    Cash and cash equivalents
 |  | $ | 63,715,906 |  |  | $ | 97,679,085 |  | 
| 
    Accounts receivable
 |  |  | 7,264,410 |  |  |  | 779,825 |  | 
| 
    Inventory
 |  |  | 441,323 |  |  |  | 703,468 |  | 
| 
    Prepaid expenses and other assets
 |  |  | 2,591,149 |  |  |  | 2,014,680 |  | 
|  |  |  |  |  |  |  |  |  | 
| 
    Total current assets
 |  |  | 74,012,788 |  |  |  | 101,177,058 |  | 
| 
    Property and equipment, net
 |  |  | 2,549,925 |  |  |  | 2,283,316 |  | 
|  |  |  |  |  |  |  |  |  | 
| 
    Total Assets
 |  | $ | 76,562,713 |  |  | $ | 103,460,374 |  | 
|  |  |  |  |  |  |  |  |  | 
|  | 
| LIABILITIES AND STOCKHOLDERS EQUITY | 
| 
    Current liabilities:
 |  |  |  |  |  |  |  |  | 
| 
    Accounts payable
 |  | $ | 6,668,791 |  |  | $ | 3,055,637 |  | 
| 
    Accrued expenses
 |  |  | 3,995,897 |  |  |  | 2,502,259 |  | 
| 
    Deferred revenue
 |  |  | 3,553,730 |  |  |  | 3,306,225 |  | 
|  |  |  |  |  |  |  |  |  | 
| 
    Total current liabilities
 |  |  | 14,218,418 |  |  |  | 8,864,121 |  | 
| 
    Deferred revenue, net of current portion
 |  |  | 45,894,726 |  |  |  | 35,963,266 |  | 
| 
    Deferred rent, net of current portion
 |  |  | 1,069,573 |  |  |  | 865,063 |  | 
| 
    Commitments and contingencies (Note 9)
 |  |  |  |  |  |  |  |  | 
| 
    Stockholders equity:
 |  |  |  |  |  |  |  |  | 
| 
    Preferred stock  $0.001 par value;
    20,000,000 shares authorized; no shares issued and
    outstanding
 |  |  |  |  |  |  |  |  | 
| 
    Common stock  $0.001 par value;
    150,000,000 shares authorized; 81,553,654 and
    77,903,944 shares issued and outstanding at
    December 31, 2008 and 2007, respectively
 |  |  | 81,554 |  |  |  | 77,904 |  | 
| 
    Additional paid-in capital
 |  |  | 128,948,064 |  |  |  | 122,685,443 |  | 
| 
    Accumulated deficit
 |  |  | (113,649,622 | ) |  |  | (64,995,423 | ) | 
|  |  |  |  |  |  |  |  |  | 
| 
    Total stockholders equity
 |  |  | 15,379,996 |  |  |  | 57,767,924 |  | 
|  |  |  |  |  |  |  |  |  | 
| 
    Total Liabilities and Stockholders Equity
 |  | $ | 76,562,713 |  |  | $ | 103,460,374 |  | 
|  |  |  |  |  |  |  |  |  | 
 
    See accompanying notes to consolidated financial statements.
    
    F-2
 
    HALOZYME
    THERAPEUTICS, INC.
    
 
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | Years Ended December 31, |  | 
|  |  | 2008 |  |  | 2007 |  |  | 2006 |  | 
|  | 
| 
    REVENUES:
 |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Revenues under collaboration agreements
 |  | $ | 8,052,202 |  |  | $ | 3,159,931 |  |  | $ | 311,121 |  | 
| 
    Product sales
 |  |  | 711,937 |  |  |  | 639,590 |  |  |  | 670,625 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Total revenues
 |  |  | 8,764,139 |  |  |  | 3,799,521 |  |  |  | 981,746 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    OPERATING EXPENSES:
 |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Cost of product sales
 |  |  | 332,324 |  |  |  | 240,429 |  |  |  | 436,990 |  | 
| 
    Research and development
 |  |  | 44,232,936 |  |  |  | 20,554,105 |  |  |  | 9,214,759 |  | 
| 
    Selling, general and administrative
 |  |  | 14,633,581 |  |  |  | 11,155,194 |  |  |  | 6,912,853 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Total operating expenses
 |  |  | 59,198,841 |  |  |  | 31,949,728 |  |  |  | 16,564,602 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    OPERATING LOSS
 |  |  | (50,434,702 | ) |  |  | (28,150,207 | ) |  |  | (15,582,856 | ) | 
| 
    Interest income
 |  |  | 1,717,503 |  |  |  | 4,254,024 |  |  |  | 830,870 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    NET LOSS BEFORE INCOME TAXES
 |  |  | (48,717,199 | ) |  |  | (23,896,183 | ) |  |  | (14,751,986 | ) | 
| 
    Income tax benefit
 |  |  | (63,000 | ) |  |  |  |  |  |  |  |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    NET LOSS
 |  | $ | (48,654,199 | ) |  | $ | (23,896,183 | ) |  | $ | (14,751,986 | ) | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Basic and diluted net loss per share
 |  | $ | (0.61 | ) |  | $ | (0.32 | ) |  | $ | (0.24 | ) | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Shares used in computing basic and diluted net loss per share
 |  |  | 79,843,707 |  |  |  | 74,317,930 |  |  |  | 62,610,265 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
 
    See accompanying notes to consolidated financial statements.
    
    F-3
 
    HALOZYME
    THERAPEUTICS, INC.
    
 
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | Years Ended December 31, |  | 
|  |  | 2008 |  |  | 2007 |  |  | 2006 |  | 
|  | 
| 
    OPERATING ACTIVITIES:
 |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Net loss
 |  | $ | (48,654,199 | ) |  | $ | (23,896,183 | ) |  | $ | (14,751,986 | ) | 
| 
    Adjustments to reconcile net loss to net cash (used in) provided
    by operating activities:
 |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Share-based compensation
 |  |  | 3,695,842 |  |  |  | 2,580,204 |  |  |  | 1,274,567 |  | 
| 
    Depreciation and amortization
 |  |  | 1,047,878 |  |  |  | 576,491 |  |  |  | 243,999 |  | 
| 
    Loss on disposal of equipment
 |  |  | 4,729 |  |  |  | 3,289 |  |  |  | 4,278 |  | 
| 
    Issuance of stock options for services
 |  |  |  |  |  |  |  |  |  |  | 9,322 |  | 
| 
    Changes in operating assets and liabilities:
 |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Accounts receivable
 |  |  | (6,484,585 | ) |  |  | (416,260 | ) |  |  | 13,802 |  | 
| 
    Inventory
 |  |  | 262,145 |  |  |  | (260,976 | ) |  |  | (163,534 | ) | 
| 
    Prepaid expenses and other assets
 |  |  | (576,469 | ) |  |  | (1,416,590 | ) |  |  | (257,602 | ) | 
| 
    Accounts payable and accrued expenses
 |  |  | 4,788,346 |  |  |  | 2,529,348 |  |  |  | 979,318 |  | 
| 
    Deferred rent
 |  |  | 363,484 |  |  |  | 865,063 |  |  |  |  |  | 
| 
    Deferred revenue
 |  |  | 10,178,965 |  |  |  | 19,287,954 |  |  |  | 19,727,399 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Net cash (used in) provided by operating activities
 |  |  | (35,373,864 | ) |  |  | (147,660 | ) |  |  | 7,079,563 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    INVESTING ACTIVITIES:
 |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Purchases of property and equipment
 |  |  | (1,159,744 | ) |  |  | (2,365,326 | ) |  |  | (364,799 | ) | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Net cash used in investing activities
 |  |  | (1,159,744 | ) |  |  | (2,365,326 | ) |  |  | (364,799 | ) | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    FINANCING ACTIVITIES:
 |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Proceeds from exercise of warrants, net
 |  |  | 1,726,713 |  |  |  | 2,305,843 |  |  |  | 7,142,469 |  | 
| 
    Proceeds from exercise of stock options, net
 |  |  | 843,716 |  |  |  | 1,707,337 |  |  |  | 156,114 |  | 
| 
    Proceeds from issuance of common stock, net
 |  |  |  |  |  |  | 51,989,488 |  |  |  | 11,043,862 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Net cash provided by financing activities
 |  |  | 2,570,429 |  |  |  | 56,002,668 |  |  |  | 18,342,445 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    NET (DECREASE) INCREASE IN CASH AND CASH EQUIVALENTS
 |  |  | (33,963,179 | ) |  |  | 53,489,682 |  |  |  | 25,057,209 |  | 
| 
    CASH AND CASH EQUIVALENTS at beginning of period
 |  |  | 97,679,085 |  |  |  | 44,189,403 |  |  |  | 19,132,194 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    CASH AND CASH EQUIVALENTS at end of period
 |  | $ | 63,715,906 |  |  | $ | 97,679,085 |  |  | $ | 44,189,403 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Supplemental disclosure of non-cash investing and financing
    activities:
 |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Accounts payable for purchases of property and equipment
 |  | $ | 159,472 |  |  | $ |  |  |  | $ |  |  | 
 
    See accompanying notes to consolidated financial statements.
    
    F-4
 
    HALOZYME
    THERAPEUTICS, INC.
    
 
    Years
    Ended December 31, 2008, 2007 and 2006
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  |  |  |  |  |  |  | Additional 
 |  |  |  |  |  | Total 
 |  | 
|  |  | Common Stock |  |  | Paid-In 
 |  |  | Accumulated 
 |  |  | Stockholders 
 |  | 
|  |  | Shares |  |  | Amount |  |  | Capital |  |  | Deficit |  |  | Equity |  | 
|  | 
| 
    BALANCE AT JANUARY 1, 2006
 |  |  | 60,246,997 |  |  | $ | 60,247 |  |  | $ | 44,493,894 |  |  | $ | (26,347,254 | ) |  | $ | 18,206,887 |  | 
| 
    Share-based compensation expense
 |  |  |  |  |  |  |  |  |  |  | 1,274,567 |  |  |  |  |  |  |  | 1,274,567 |  | 
| 
    Issuance of common stock for cash, net
 |  |  | 3,385,000 |  |  |  | 3,385 |  |  |  | 11,040,477 |  |  |  |  |  |  |  | 11,043,862 |  | 
| 
    Issuance of common stock pursuant to exercise of warrants, net
 |  |  | 4,818,846 |  |  |  | 4,819 |  |  |  | 7,137,650 |  |  |  |  |  |  |  | 7,142,469 |  | 
| 
    Issuance of common stock pursuant to exercise of stock options
 |  |  | 196,150 |  |  |  | 196 |  |  |  | 155,918 |  |  |  |  |  |  |  | 156,114 |  | 
| 
    Issuance of restricted stock awards
 |  |  | 90,000 |  |  |  | 90 |  |  |  | (90 | ) |  |  |  |  |  |  |  |  | 
| 
    Issuance of stock options to consultants for services
 |  |  |  |  |  |  |  |  |  |  | 9,322 |  |  |  |  |  |  |  | 9,322 |  | 
| 
    Net loss
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  | (14,751,986 | ) |  |  | (14,751,986 | ) | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    BALANCE AT DECEMBER 31, 2006
 |  |  | 68,736,993 |  |  |  | 68,737 |  |  |  | 64,111,738 |  |  |  | (41,099,240 | ) |  |  | 23,081,235 |  | 
| 
    Share-based compensation expense
 |  |  |  |  |  |  |  |  |  |  | 2,580,204 |  |  |  |  |  |  |  | 2,580,204 |  | 
| 
    Issuance of common stock for cash, net
 |  |  | 5,570,394 |  |  |  | 5,570 |  |  |  | 51,983,918 |  |  |  |  |  |  |  | 51,989,488 |  | 
| 
    Issuance of common stock pursuant to exercise of warrants, net
 |  |  | 1,783,852 |  |  |  | 1,784 |  |  |  | 2,304,059 |  |  |  |  |  |  |  | 2,305,843 |  | 
| 
    Issuance of common stock pursuant to exercise of stock options
 |  |  | 1,707,705 |  |  |  | 1,708 |  |  |  | 1,705,629 |  |  |  |  |  |  |  | 1,707,337 |  | 
| 
    Issuance of restricted stock awards
 |  |  | 105,000 |  |  |  | 105 |  |  |  | (105 | ) |  |  |  |  |  |  |  |  | 
| 
    Net loss
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  | (23,896,183 | ) |  |  | (23,896,183 | ) | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    BALANCE AT DECEMBER 31, 2007
 |  |  | 77,903,944 |  |  |  | 77,904 |  |  |  | 122,685,443 |  |  |  | (64,995,423 | ) |  |  | 57,767,924 |  | 
| 
    Share-based compensation expense
 |  |  |  |  |  |  |  |  |  |  | 3,695,842 |  |  |  |  |  |  |  | 3,695,842 |  | 
| 
    Issuance of common stock pursuant to exercise of warrants, net
 |  |  | 1,628,374 |  |  |  | 1,628 |  |  |  | 1,725,085 |  |  |  |  |  |  |  | 1,726,713 |  | 
| 
    Issuance of common stock pursuant to exercise of stock options
 |  |  | 1,828,836 |  |  |  | 1,829 |  |  |  | 841,887 |  |  |  |  |  |  |  | 843,716 |  | 
| 
    Issuance of restricted stock awards
 |  |  | 192,500 |  |  |  | 193 |  |  |  | (193 | ) |  |  |  |  |  |  |  |  | 
| 
    Net loss
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  | (48,654,199 | ) |  |  | (48,654,199 | ) | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    BALANCE AT DECEMBER 31, 2008
 |  |  | 81,553,654 |  |  | $ | 81,554 |  |  | $ | 128,948,064 |  |  | $ | (113,649,622 | ) |  | $ | 15,379,996 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
 
    See accompanying notes to consolidated financial statements.
    
    F-5
 
    Halozyme
    Therapeutics, Inc.
    
 
 
    |  |  | 
    | 1. | Organization
    and Business | 
 
    Halozyme Therapeutics, Inc. (Halozyme or the
    Company) is a biopharmaceutical company dedicated to
    the development and commercialization of products targeting the
    extracellular matrix for the endocrinology, oncology,
    dermatology and drug delivery markets. The Companys
    existing products and products under development are based on
    intellectual property covering the family of human enzymes known
    as hyaluronidases.
 
    The Companys operations to date have been limited to
    organizing and staffing the Company, acquiring, developing and
    securing its technology and undertaking product development for
    its existing products and a limited number of product
    candidates. The Companys key partnerships are with F.
    Hoffmann-La Roche, Ltd and Hoffmann-La Roche, Inc.
    (Roche), to apply
    Enhanzetm
    Technology to Roches biological therapeutic compounds for
    up to 13 targets and with Baxter Healthcare Corporation
    (Baxter), to apply Enhanze Technology to
    Baxters biological therapeutic compound, GAMMAGARD
    LIQUIDtm.
    The Company has two marketed products: HYLENEX, a registered
    trademark of Baxter International, Inc., a product used as an
    adjuvant to increase the absorption and dispersion of other
    injected drugs and fluids, and
    Cumulase®,
    a product used for in vitro fertilization, or IVF.
    Currently, the Company has only limited revenue from the sales
    of HYLENEX and Cumulase, in addition to revenues from its
    partnerships with Baxter and Roche.
 
    |  |  | 
    | 2. | Summary
    of Significant Accounting Policies | 
 
    Basis
    of Presentation
 
    The consolidated financial statements include the accounts of
    Halozyme Therapeutics, Inc. and its wholly owned subsidiary,
    Halozyme, Inc. All intercompany accounts and transactions have
    been eliminated.
 
    Use of
    Estimates
 
    The preparation of consolidated financial statements in
    conformity with U.S. generally accepted accounting
    principles (U.S. GAAP) requires management to
    make estimates and assumptions that affect the amounts reported
    in the Companys consolidated financial statements and
    accompanying notes. On an ongoing basis, the Company evaluates
    its estimates and judgments, which are based on historical and
    anticipated results and trends and on various other assumptions
    that management believes to be reasonable under the
    circumstances. By their nature, estimates are subject to an
    inherent degree of uncertainty and, as such, actual results may
    differ from managements estimates.
 
    Cash
    and Cash Equivalents
 
    Cash and cash equivalents consist of highly liquid investments
    with original maturities of three months or less from the
    original purchase date.
 
    The Company has restricted certificates of deposits totaling
    $675,000 and $400,000 as of December 31, 2008 and 2007,
    respectively. These restricted deposits represent amounts
    pledged to the Companys bank as collateral for letters of
    credit issued in connection with certain of the Companys
    real estate lease agreements and are included in cash and cash
    equivalents. The lease agreements expire in January 2013.
 
    Concentrations
 
    Financial instruments that potentially subject us to a
    significant concentration of credit risk consist of cash and
    cash equivalents and accounts receivable. The Company maintains
    its cash balances with one major commercial bank. Deposits held
    with the bank exceed the amount of insurance provided on such
    deposits.
 
    The Company sells its products to established distributors in
    the pharmaceutical industry. Credit is extended based on an
    evaluation of the customers financial condition.
    Approximately 99% and 91% of the accounts receivable balance as
    of December 31, 2008 and 2007, respectively, represents
    amounts due from two customers.
    
    F-6
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    Management evaluates the collectibility of the accounts
    receivable based on a variety of factors including the length of
    time the receivables are past due, the financial health of the
    customer and historical experience. Based upon the review of
    these factors, the Company did not record an allowance for
    doubtful accounts at December 31, 2008 and 2007. For the
    years ended December 31, 2008, 2007 and 2006, 51%, 36% and
    55% of total revenues were from Baxter and 44%, 50% and 10% were
    from Roche, respectively.
 
    The Company relies on two third-party manufacturers for the
    supply of the active pharmaceutical ingredient in each of its
    current products. Payments due to these suppliers represent 39%
    and 20% of the accounts payable balance at December 31,
    2008 and 2007, respectively.
 
    Accounts
    Receivable
 
    Accounts receivable is recorded at the invoiced amount and is
    non-interest bearing. Accounts receivable is recorded net of an
    allowance for doubtful accounts. Currently, the allowance for
    doubtful accounts is zero as the collectibility of accounts
    receivable is reasonably assured. The Company is obligated to
    accept returns for product that does not meet product
    specifications. Historically, the Company has not had any
    product returns; therefore, no allowance for product returns has
    been established.
 
    Inventory
 
    Inventory is stated at lower of cost or market. Cost, which
    includes amounts related to materials and costs incurred by the
    Companys contract manufacturer, is determined on a
    first-in,
    first-out basis. Inventories are reviewed periodically for
    slow-moving or obsolete status. Management evaluates the
    carrying value of inventories on a regular basis, taking into
    account such factors as historical and anticipated future sales
    compared to quantities on hand, the price it expects to obtain
    for products in their respective markets compared with
    historical cost and the remaining shelf life of goods on hand.
 
    Property
    and Equipment
 
    Property and equipment are recorded at cost. Equipment are
    depreciated using the straight-line method over their estimated
    useful lives of three years and leasehold improvements are
    amortized using the straight-line method over the estimated
    useful life of the asset or the lease term, whichever is shorter.
 
    Impairment
    of Long-Lived Assets
 
    The Company accounts for the impairment and disposition of
    long-lived assets in accordance with Statement of Financial
    Accounting Standards (SFAS) No. 144,
    Accounting for the Impairment or Disposal of Long-Lived
    Assets. In accordance with SFAS No. 144,
    long-lived assets are reviewed for events of changes in
    circumstances, which indicate that their carrying value may not
    be recoverable. At December 31, 2008, there has been no
    impairment of the value of such assets.
 
    Fair
    Value of Financial Instruments
 
    The carrying value of cash equivalents, accounts receivable,
    accounts payable and accrued expenses approximates fair value.
    See Fair Value Measurements below for further discussion
    of fair value.
 
    Fair
    Value Measurements
 
    Effective January 1, 2008, the Company adopted
    SFAS No. 157, Fair Value Measurements, and FSP
    No. FAS 157-3,
    Determining the Fair Value of a Financial Asset When the
    Market for That Asset is Not Active. SFAS No. 157
    defines fair value, establishes a framework for measuring fair
    value under U.S. GAAP and enhances disclosures about fair
    value measurements. FSP
    No. FAS 157-3
    clarifies the application of SFAS No. 157 in a market
    that is not active and provides an example to illustrate key
    considerations in determining the fair value of a
    
    F-7
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    financial asset when the market for that financial asset is not
    active. The adoption of SFAS No. 157 and FSP
    No. FAS 157-3
    did not have a material impact on the Companys
    consolidated financial position or results of operations.
 
    SFAS No. 157 prioritizes the inputs used in measuring
    fair value into the following hierarchy:
 
    |  |  |  | 
| 
    Level 1
 |  | Quoted prices (unadjusted) in active markets for identical
    assets or liabilities; | 
| 
    Level 2
 |  | Inputs other than quoted prices included within Level 1
    that are either directly or indirectly observable; and | 
| 
    Level 3
 |  | Unobservable inputs in which little or no market activity
    exists, therefore requiring an entity to develop its own
    assumptions about the assumptions that market participants would
    use in pricing. | 
 
 
    Cash and cash equivalents of approximately $63.7 million at
    December 31, 2008 are carried at fair value based on quoted
    market prices for identical securities (Level 1 inputs).
 
    Effective January 1, 2008, the Company adopted
    SFAS No. 159, The Fair Value Option for Financial
    Assets and Financial Liabilities. SFAS No. 159
    allows an entity the irrevocable option to elect to measure
    specified financial assets and liabilities in their entirety at
    fair value on a
    contract-by-contract
    basis. If an entity elects the fair value option for an eligible
    item, changes in the items fair value must be reported as
    unrealized gains and losses in earnings at each subsequent
    reporting date. In adopting SFAS No. 159, the Company
    did not elect the fair value option for any of its financial
    assets or financial liabilities.
 
    Revenue
    Recognition
 
    The Company generates revenues from product sales and
    collaborative agreements. Payments received under collaborative
    agreements may include nonrefundable fees at the inception of
    the agreements, license fees, milestone payments for specific
    achievements designated in the collaborative agreements,
    reimbursements of research and development services
    and/or
    royalties on sales of products resulting from collaborative
    agreements.
 
    The Company recognizes revenues in accordance with SEC Staff
    Accounting Bulletin No. 104, Revenue Recognition,
    and EITF Issue
    No. 00-21,
    Revenue Arrangements with Multiple Deliverables. The
    Company recognizes revenue when all of the following criteria
    are met: (1) persuasive evidence of an arrangement exists;
    (2) delivery has occurred or services have been rendered;
    (3) the sellers price to the buyer is fixed and
    determinable; and (4) collectibility is reasonably assured.
 
    Product Sales  Revenues from the sales of
    Cumulase are recognized when the transfer of ownership occurs,
    which is upon shipment to the distributors. The Company is
    obligated to accept returns for product that does not meet
    product specifications. Historically, the Company has not had
    any product returns as a result of not meeting product
    specifications.
 
    In accordance with the Amended and Restated Development and
    Supply Agreement (the HYLENEX Partnership) with
    Baxter, the Company supplies Baxter with the active
    pharmaceutical ingredient (API) for HYLENEX at its
    fully burdened cost plus a margin. Baxter fills and finishes
    HYLENEX and holds it for subsequent distribution, at which time
    the Company ensures it meets product specifications and releases
    it as available for sale. Because of the Companys
    continued involvement in the development and production process
    of HYLENEX, the earnings process is not considered to be
    complete. Accordingly, the Company defers the revenue and
    related product costs on the API for HYLENEX until the product
    is filled, finished, packaged and released. Baxter may only
    return the API for HYLENEX to the Company if it does not conform
    to the specified criteria set forth in the HYLENEX Partnership
    or upon termination of such agreement. The Company has
    historically demonstrated that the API shipped to Baxter has
    consistently met the specified criteria. Therefore, no allowance
    for product returns has been established. In addition, the
    Company receives product-based payments upon the sale of HYLENEX
    by Baxter, in accordance with the terms of the HYLENEX
    Partnership. Product sales revenues are recognized as the
    
    F-8
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    Company earns such revenues based on Baxters shipments of
    HYLENEX to its distributors when such amounts can be reasonably
    estimated.
 
    Collaborative Agreements  The Company analyzes
    each element of its collaborative agreements to determine the
    appropriate revenue recognition. The Company recognizes revenue
    on nonrefundable upfront payments and license fees in which it
    has an ongoing involvement or performance obligation over the
    period of significant involvement under the related agreements.
    The Company recognizes milestone payments upon the achievement
    of specified milestones if (1) the milestone is substantive
    in nature and the achievement of the milestone was not
    reasonably assured at the inception of the agreement,
    (2) the fees are nonrefundable and (3) our performance
    obligations after the milestone achievement will continue to be
    funded by our collaborator at a level comparable to the level
    before the milestone achievement. Any milestone payments
    received prior to satisfying these revenue recognition criteria
    are recorded as deferred revenue. Reimbursements of research and
    development services are recognized as revenue during the period
    in which the services are performed. Royalties to be received
    based on sales of licensed products by the Companys
    collaborators incorporating the Companys products will be
    recognized as earned.
 
    Cost
    of Sales
 
    Cost of product sales consists primarily of raw materials,
    third-party manufacturing costs, fill and finish costs and
    freight costs associated with the sales of Cumulase, and the API
    for HYLENEX.
 
    Research
    and Development Expenses
 
    Effective January 1, 2008, the Company adopted Emerging
    Issues Task Force (EITF) Issue
    No. 07-3,
    Accounting for Nonrefundable Advance Payments for Goods or
    Services Received for Use in Future Research and Development
    Activities. EITF Issue
    No. 07-3
    requires that nonrefundable advance payments for goods or
    services that will be used or rendered for future research and
    development activities be deferred and capitalized. Such amounts
    should be recognized as an expense as the related goods are
    delivered or the related services are performed or such time
    when the entity does not expect the goods to be delivered or
    services to be performed. The adoption of EITF Issue
    No. 07-3
    did not have a material impact on the Companys
    consolidated financial position or results of operations.
 
    Research and development expenses include salaries and benefits,
    facilities and other overhead expenses, external clinical
    trials, research-related manufacturing services, contract
    services and other outside expenses. Research and development
    expenses are charged to operations as incurred when these
    expenditures relate to the Companys research and
    development efforts and have no alternative future uses.
 
    Advance payments, including nonrefundable amounts, for goods or
    services that will be used or rendered for future research and
    development activities are deferred and capitalized. Such
    amounts will be recognized as an expense as the related goods
    are delivered or the related services are performed. If the
    goods will not be delivered, or services will not be rendered,
    then the capitalized advance payment is charged to expense.
 
    Milestone payments that the Company makes in connection with
    in-licensed technology or product candidates are expensed as
    incurred when there is uncertainty in receiving future economic
    benefits from the licensed technology or product candidates. The
    Company considers the future economic benefits from the licensed
    technology or product candidates to be uncertain until such
    licensed technology or product candidates are approved for
    marketing by the FDA or when other significant risk factors are
    abated. For expense accounting purposes, management has viewed
    future economic benefits for all of our licensed technology or
    product candidates to be uncertain.
    
    F-9
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    Clinical
    Trial Expenses
 
    Expenses related to clinical trials are accrued based on the
    Companys estimates
    and/or
    representations from service providers regarding work performed,
    including actual level of patient enrollment, completion of
    patient studies and clinical trials progress. Other incidental
    costs related to patient enrollment or treatment are accrued
    when reasonably certain. If the contracted amounts are modified
    (for instance, as a result of changes in the clinical trial
    protocol or scope of work to be performed), the Company modifies
    its accruals accordingly on a prospective basis. Revisions in
    the scope of a contract are charged to expense in the period in
    which the facts that give rise to the revision become reasonably
    certain. Historically, the Company has had no material changes
    in its clinical trial expense accruals that would have had a
    material impact on its consolidated results of operations or
    financial position.
 
    Share-Based
    Payments
 
    The Company accounts for share-based awards exchanged for
    employee services in accordance with SFAS No. 123(R),
    Share-Based Payment. Under SFAS No. 123R,
    share-based compensation expense is measured at the grant date,
    based on the estimated fair value of the award, and is
    recognized as expense, net of estimated forfeitures, over the
    employees requisite service period
    and/or
    performance period.
 
    Share-based compensation expense recognized during the period is
    based on the value of the portion of
    share-based
    payment awards that is ultimately expected to vest during the
    period. Share awards are amortized under the straight-line
    method. Share-based compensation expense for an award with a
    performance condition is recognized when the achievement of such
    performance condition is determined to be probable. If the
    outcome of such performance condition is not determined to be
    probable or is not met, no compensation expense is recognized
    and any recognized compensation expense is reversed. As
    share-based compensation expense recognized is based on awards
    ultimately expected to vest, it has been reduced for estimated
    forfeitures. SFAS No. 123R requires forfeitures to be
    estimated at the time of grant and revised, if necessary, in
    subsequent periods if actual forfeitures differ from those
    estimates. Pre-vesting forfeitures were estimated to be
    approximately 10% for employees in the years ended
    December 31, 2008, 2007 and 2006 based on the
    Companys historical experience and those of its peer group.
 
    Total share-based compensation expense related to share-based
    awards, recognized under SFAS No. 123R, for the years
    ended December 31, 2008, 2007 and 2006 was comprised of the
    following:
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | Years Ended December 31, |  | 
|  |  | 2008 |  |  | 2007 |  |  | 2006 |  | 
|  | 
| 
    Research and development
 |  | $ | 1,541,003 |  |  | $ | 662,690 |  |  | $ | 424,305 |  | 
| 
    Selling, general and administrative
 |  |  | 2,154,839 |  |  |  | 1,917,514 |  |  |  | 850,262 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Share-based compensation expense before taxes
 |  |  | 3,695,842 |  |  |  | 2,580,204 |  |  |  | 1,274,567 |  | 
| 
    Related income tax benefits
 |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Share-based compensation expense
 |  | $ | 3,695,842 |  |  | $ | 2,580,204 |  |  | $ | 1,274,567 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Net share-based compensation expense, per basic and diluted share
 |  | $ | 0.05 |  |  | $ | 0.03 |  |  | $ | 0.02 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Share-based compensation expense from:
 |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Stock options
 |  | $ | 2,691,571 |  |  | $ | 1,857,249 |  |  | $ | 1,136,530 |  | 
| 
    Restricted stock awards
 |  |  | 1,004,271 |  |  |  | 722,955 |  |  |  | 138,037 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | $ | 3,695,842 |  |  | $ | 2,580,204 |  |  | $ | 1,274,567 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
    
    F-10
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    SFAS No. 123R requires that cash flows resulting from
    tax deductions in excess of the cumulative compensation cost
    recognized for options exercised (excess tax benefits) be
    classified as cash inflows provided by financing activities and
    cash outflows used in operating activities. Due to the
    Companys net loss position, no tax benefits have been
    recognized in the consolidated statements of cash flows.
 
    The Company accounts for stock options granted to non-employees
    in accordance with EITF Issue
    No. 96-18,
    Accounting for Equity Instruments That Are Issued to Other
    Than Employees for Acquiring, or in Conjunction with Selling,
    Goods or Services. Under EITF Issue
    No. 96-18,
    the Company determines the fair value of the stock options
    granted as either the fair value of the consideration received
    or the fair value of the equity instruments issued, whichever is
    more reliably measurable. The Company recognized approximately
    $0, $0 and $9,000 in stock-based compensation expense related to
    stock options granted to non-employees for the years ended
    December 31, 2008, 2007 and 2006, respectively.
 
    Income
    Taxes
 
    Income taxes are recorded in accordance with
    SFAS No. 109, Accounting for Income Taxes, which
    requires the recognition of deferred tax assets and liabilities
    to reflect the future tax consequences of events that have been
    recognized in the Companys consolidated financial
    statements or tax returns. Measurement of the deferred items is
    based on enacted tax laws. In the event the future consequences
    of differences between financial reporting bases and tax bases
    of the Companys assets and liabilities result in a
    deferred tax asset, SFAS No. 109 requires an
    evaluation of the probability of being able to realize the
    future benefits indicated by such assets. The Company records a
    valuation allowance to reduce the deferred tax assets to the
    amount that is more likely than not to be realized. Management
    has considered future taxable income and ongoing tax planning
    strategies in assessing the need for the valuation allowance. In
    the event the Company were to determine that it would be able to
    realize the deferred tax assets in the future in excess of their
    net recorded amounts, an adjustment to the deferred tax assets
    would increase the income in the period such determination was
    made. Likewise, should the Company determine that it would not
    be able to realize all or part of the net deferred tax assets in
    the future, an adjustment to the deferred tax assets would be
    charged to income in the period such determination was made.
 
    Effective January 1, 2007, the Company adopted the
    provisions of FASB Interpretation (FIN) No. 48,
    Accounting for Uncertainty in Income Taxes  An
    Interpretation of FASB Statement No. 109. Under
    FIN No. 48, the impact of an uncertain income tax
    position on the income tax return must be recognized at the
    largest amount that is more-likely-than-not to be sustained upon
    audit by the relevant taxing authority. An uncertain income tax
    position will not be recognized if it has less than a 50%
    likelihood of being sustained. Additionally,
    FIN No. 48 also provides guidance on derecognition,
    measurement, classification, interest and penalties, accounting
    in interim periods, disclosure and transition. The adoption of
    FIN No. 48 had no impact on the Companys
    consolidated financial position or results of operations. At the
    date of adoption and at December 31, 2008 and 2007, the
    Companys unrecognized income tax benefits and uncertain
    tax provisions were not material.
 
    Net
    Loss Per Share
 
    The Company calculates basic and diluted net loss per common
    share in accordance with SFAS No. 128, Earnings Per
    Share, and SEC Staff Accounting Bulletin (SAB)
    No. 98. Basic net loss per common share is computed by
    dividing net loss for the period by the weighted average number
    of common shares outstanding during the period, without
    consideration for common stock equivalents. Stock options,
    unvested stock awards and warrants are considered to be common
    equivalents and are only included in the calculation of diluted
    earnings per common share when their effect is dilutive. Because
    of the Companys net loss, all outstanding stock options,
    unvested stock awards and warrants were excluded from the
    calculation. The Company has excluded the following stock
    options,
    
    F-11
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    unvested stock awards and warrants from the calculation of
    diluted net loss per common share as of December 31, 2008,
    2007 and 2006 because their effect is anti-dilutive:
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | 2008 |  |  | 2007 |  |  | 2006 |  | 
|  | 
| 
    Stock options and awards
 |  |  | 7,447,285 |  |  |  | 7,914,979 |  |  |  | 8,727,322 |  | 
| 
    Warrants
 |  |  | 3,230,656 |  |  |  | 4,859,030 |  |  |  | 6,714,403 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  |  | 10,677,941 |  |  |  | 12,774,009 |  |  |  | 15,441,725 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
 
    Segment
    Information
 
    The Company operates in one segment, which is the research,
    development and commercialization of products based on the
    extracellular matrix for the endocrinology, oncology,
    dermatology and drug delivery markets. The chief operating
    decision-makers review the operating results on an aggregate
    basis and manage the operations as a single operating segment.
 
    Pending
    Adoption of Recent Accounting Pronouncements
 
    In December 2007, the FASB ratified EITF Issue
    No. 07-01,
    Accounting for Collaboration Arrangements, which is
    focused on how the parties to a collaborative agreement should
    account for costs incurred and revenue generated on sales to
    third parties, how sharing payments pursuant to a collaboration
    agreement should be presented in the statement of operations and
    certain related disclosure questions. EITF
    No. 07-01
    is effective for the Company in the first quarter of 2009. The
    Company does not expect the adoption of EITF
    No. 07-01
    to have a material impact on its consolidated financial position
    or results of operations.
 
    In December 2007, the FASB issued SFAS No. 141
    (revised 2007), Business Combinations
    (SFAS 141(R)). SFAS 141(R) establishes
    principles and requirements for how an acquirer recognizes and
    measures in its financial statements the identifiable assets
    acquired, the liabilities assumed, any noncontrolling interest
    in the acquiree and the goodwill acquired in connection with
    business combinations. SFAS 141(R) also establishes
    disclosure requirements to enable the evaluation of the nature
    and financial effects of the business combination.
    SFAS 141(R) is effective for fiscal years beginning on or
    after December 15, 2008. The Company does not expect the
    adoption of SFAS 141(R) to have a material effect on its
    consolidated financial condition and results of operations.
 
    In May 2008, the FASB issued SFAS No. 162,
    Hierarchy of Generally Accepted Accounting Principles.
    This statement is intended to improve financial reporting by
    identifying a consistent framework, or hierarchy, for selecting
    accounting principles to be used in preparing financial
    statements of nongovernmental entities that are presented in
    conformity with GAAP. This statement will be effective
    60 days following the SECs approval of the Public
    Company Accounting Oversight Board amendment to AU
    Section 411, The Meaning of Present Fairly in Conformity
    with Generally Accepted Accounting Principles. The Company
    does not expect the adoption of SFAS No. 162 to have a
    material impact on its consolidated financial position or
    results of operations.
 
    In June 2008, the FASB issued FSP
    No. EITF 03-6-1,
    Determining Whether Instruments Granted in Share-Based
    Payment Transactions Are Participating Securities. FSP
    No. EITF 03-6-1
    clarified that all outstanding unvested share-based payment
    awards that contain rights to nonforfeitable dividends
    participate in undistributed earnings with common shareholders.
    Awards of this nature are considered participating securities
    and the two-class method of computing basic and diluted earnings
    per share must be applied. FSP
    No. EITF 03-6-1
    is effective for the Company in the first quarter of 2009. The
    Company does not expect the adoption of FSP
    EITF 03-6-1
    to have a material impact on its consolidated financial position
    or results of operations.
 
    In June 2008, the FASB ratified EITF Issue
    No. 07-5,
    Determining Whether an Instrument (or an Embedded Feature) Is
    Indexed to an Entitys Own Stock. EITF Issue
    No. 07-5
    provides that an entity should use a two step approach to
    evaluate whether an equity-linked financial instrument (or
    embedded feature) is indexed to its own stock, including
    evaluating the instruments contingent exercise and
    settlement provisions. It also clarifies the
    
    F-12
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    impact of foreign currency denominated strike prices and
    market-based employee stock option valuation instruments on the
    evaluation. EITF Issue
    No. 07-5
    is effective for the Company in the first quarter of 2009. The
    Company does not expect the adoption of EITF Issue
    No. 07-5
    to have a material impact on its consolidated financial position
    or results of operations.
 
 
    Inventory consists of the following as of December 31, 2008
    and 2007:
 
    |  |  |  |  |  |  |  |  |  | 
|  |  | 2008 |  |  | 2007 |  | 
|  | 
| 
    Raw materials
 |  | $ | 435,386 |  |  | $ | 578,397 |  | 
| 
    Finished goods
 |  |  | 5,937 |  |  |  | 78,677 |  | 
| 
    Work in process
 |  |  |  |  |  |  | 46,394 |  | 
|  |  |  |  |  |  |  |  |  | 
|  |  | $ | 441,323 |  |  | $ | 703,468 |  | 
|  |  |  |  |  |  |  |  |  | 
 
    Inventory is used in the manufacture of the Companys
    HYLENEX and Cumulase products and is stated at the lower of cost
    or market.
 
    |  |  | 
    | 4. | Property
    and Equipment | 
 
    Property and equipment consists of the following as of
    December 31, 2008 and 2007:
 
    |  |  |  |  |  |  |  |  |  | 
|  |  | 2008 |  |  | 2007 |  | 
|  | 
| 
    Research equipment
 |  | $ | 2,699,706 |  |  | $ | 1,892,658 |  | 
| 
    Computer and office equipment
 |  |  | 1,079,034 |  |  |  | 789,851 |  | 
| 
    Leasehold improvements
 |  |  | 814,067 |  |  |  | 633,996 |  | 
|  |  |  |  |  |  |  |  |  | 
|  |  |  | 4,592,807 |  |  |  | 3,316,505 |  | 
| 
    Accumulated depreciation and amortization
 |  |  | (2,042,882 | ) |  |  | (1,033,189 | ) | 
|  |  |  |  |  |  |  |  |  | 
|  |  | $ | 2,549,925 |  |  | $ | 2,283,316 |  | 
|  |  |  |  |  |  |  |  |  | 
 
    Depreciation and amortization expense was approximately
    $1.0 million, $576,000 and $244,000, for the years ended
    December 31, 2008, 2007 and 2006, respectively.
 
 
    Accrued expenses consist of the following as of
    December 31, 2008 and 2007:
 
    |  |  |  |  |  |  |  |  |  | 
|  |  | 2008 |  |  | 2007 |  | 
|  | 
| 
    Accrued compensation and payroll taxes
 |  | $ | 2,060,866 |  |  | $ | 1,418,313 |  | 
| 
    Accrued outsourced research and clinical trial expenses
 |  |  | 1,329,954 |  |  |  | 424,385 |  | 
| 
    Accrued expenses
 |  |  | 605,077 |  |  |  | 659,561 |  | 
|  |  |  |  |  |  |  |  |  | 
|  |  | $ | 3,995,897 |  |  | $ | 2,502,259 |  | 
|  |  |  |  |  |  |  |  |  | 
    
    F-13
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
 
    Deferred revenue consists of the following as of
    December 31, 2008 and 2007:
 
    |  |  |  |  |  |  |  |  |  | 
|  |  | 2008 |  |  | 2007 |  | 
|  | 
| 
    Collaborative agreements
 |  | $ | 49,273,306 |  |  | $ | 39,079,524 |  | 
| 
    Product sales
 |  |  | 175,150 |  |  |  | 189,967 |  | 
|  |  |  |  |  |  |  |  |  | 
| 
    Total deferred revenue
 |  |  | 49,448,456 |  |  |  | 39,269,491 |  | 
| 
    Less current portion
 |  |  | 3,553,730 |  |  |  | 3,306,225 |  | 
|  |  |  |  |  |  |  |  |  | 
| 
    Deferred revenue, net of current portion
 |  | $ | 45,894,726 |  |  | $ | 35,963,266 |  | 
|  |  |  |  |  |  |  |  |  | 
 
    Roche Partnership  In December 2006, the
    Company and Roche entered into a license and collaborative
    agreement for Enhanze Technology (the Roche
    Partnership). Under the terms of the Roche Partnership,
    Roche obtained a worldwide, exclusive license to develop and
    commercialize product combinations of rHuPH20, the
    Companys proprietary recombinant human hyaluronidase, and
    up to thirteen Roche target compounds resulting from the
    collaboration. Roche paid $20.0 million to the Company in
    December 2006 as an initial upfront payment for the application
    of rHuPH20 to three pre-defined Roche biologic targets. In
    December 2008, the Company was entitled to receive an aggregate
    of approximately $9.3 million from Roche in connection with
    Roches election of a fourth exclusive target and annual
    designation maintenance fees for the remaining nine Roche
    targets.
 
    Due to the Companys continuing involvement obligations,
    revenues from the upfront payment, exclusive designation fees
    and annual designation maintenance fees were deferred and are
    being recognized over the term of the Roche Partnership. The
    Company recognized revenue from the upfront payment, exclusive
    designation fees and annual maintenance designation fees under
    the Roche Partnership in the amounts of approximately
    $1.2 million, $1.2 million and $81,000 for the years
    ended December 31, 2008, 2007 and 2006, respectively.
 
    Baxter Partnerships  In September 2007, the
    Company and Baxter entered into an Enhanze Technology License
    and Collaboration Agreement (the Gammagard
    Partnership). Under the terms of the Gammagard
    Partnership, Baxter paid the Company a nonrefundable upfront
    payment of $10.0 million. Due to the Companys
    continuing involvement obligations, the $10.0 million
    upfront payment was deferred and is being recognized over the
    term of the Gammagard Partnership. The Company recognized
    revenue from the upfront payment under the Gammagard Partnership
    in the amounts of approximately $606,000 and $192,000 for the
    years ended December 31, 2008 and 2007, respectively.
 
    In February 2007, the Company and Baxter amended certain
    existing agreements for HYLENEX and entered into a new agreement
    for kits and formulations with rHuPH20 (the HYLENEX
    Partnership). Under the terms of the HYLENEX Partnership,
    Baxter paid the Company a nonrefundable upfront payment of
    $10.0 million. Due to the Companys continuing
    involvement obligations, the $10.0 million upfront payment
    was deferred and is being recognized over the term of the
    HYLENEX Partnership. The Company recognized revenue from the
    upfront payment under the HYLENEX Partnership in the amounts of
    approximately $586,000 and $516,000 for the years ended
    December 31, 2008 and 2007, respectively.
 
    In addition, Baxter will make payments to the Company based on
    sales of the products covered under the HYLENEX Partnership.
    Through December 31, 2008, Baxter prepaid a total of
    $4.5 million of such product-based payments in connection
    with the execution of the HYLENEX Partnership. In January 2009,
    Baxter prepaid another $5.5 million of such product-based
    payments. The prepaid product-based payments are deferred and
    are being recognized as product sales revenues as the Company
    earns such revenues from the sales of HYLENEX by Baxter.
 
 
    Issuance of Common Stock  During 2008, the
    Company issued an aggregate of 3,649,710 shares of common
    stock in connection with the exercises of stock purchase
    warrants (1,628,374 shares at a weighted average price of
    
    F-14
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    $1.06 per share), stock options (1,828,836 shares at a
    weighted average price of $0.55 per share) and restricted stock
    awards (192,500 shares at a price of $0.001 per share) for
    cash in the aggregate amount of approximately $2.6 million.
 
    In April 2007, the Company entered into a definitive stock
    purchase agreement (the Purchase Agreement) with New
    River Management V, LP (New River). Under the
    terms of the Purchase Agreement, New River purchased 3,500,000
    newly-issued shares of the Companys common stock for an
    aggregate price of approximately $32.1 million. The sale of
    the shares was completed in May 2007. The Company has agreed to
    file a registration statement upon demand with the SEC covering
    the resale of these shares.
 
    In February 2007, an affiliate of Baxter purchased
    2,070,394 shares of the Companys common stock for an
    aggregate price of approximately $20.0 million.
 
    In December 2006, the Company issued and sold to an accredited
    investor, an affiliate of Roche (the Purchaser),
    3,385,000 shares (the Shares) of the
    Companys common stock at a price of $3.27 per share, for
    gross proceeds of approximately $11.1 million. The Shares
    were sold pursuant to exemptions from registration under
    Regulation D of the Securities Act. In December 2006, the
    Company also entered into a registration rights agreement (the
    Rights Agreement) with the Purchaser, under which
    the Company may be required to register the Shares upon the
    occurrence of certain events set forth in the Rights Agreement.
    Such triggering events include, but are not limited to, the
    registration of shares pursuant to a registration statement not
    currently in effect. The Rights Agreement will terminate at such
    time as the Purchaser may sell the Shares in any three-month
    period pursuant to the provisions of Rule 144 under the
    Securities Act of 1933, as amended. As of December 31,
    2008, the Company had not filed a registration statement with
    the SEC covering the resale of the Shares.
 
    During 2007, the Company issued an aggregate of
    3,596,557 shares of common stock in connection with the
    exercises of stock purchase warrants (1,783,852 shares at a
    weighted average price of $1.29 per share), stock options
    (1,707,705 shares at a weighted average price of $1.00 per
    share) and restricted stock awards (105,000 shares at a
    price of $0) for cash in the aggregate amount of approximately
    $4.0 million.
 
    During 2006, the Company issued an aggregate of
    5,104,996 shares of common stock in connection with the
    exercises of stock purchase warrants (4,818,846 shares at a
    weighted average price of $1.48 per share), stock options
    (196,150 shares at a weighted average price of $0.80 per
    share) and restricted stock awards (90,000 shares at a
    price of $0) for cash in the aggregate amount of approximately
    $7.3 million.
 
    Issuance of Common Stock Options for Services 
    In 2006, an option to purchase 13,332 shares of the
    Companys common stock was issued to a consultant for
    services received and the stock option was valued at
    approximately $9,000. These options were fully exercisable and
    fully vested on the date of grant and shall expire in ten years
    based on the terms of the options. The fair value of these
    options was recorded as a noncash stock expense.
 
    Warrants  In connection with the October 2004
    private placement, the Company issued warrants to purchase
    2,709,542 shares of common stock at an exercise price of
    $2.25 per share. These warrants are exercisable until
    October 12, 2009. As of December 31, 2008 and 2007,
    1,927,715 and 2,030,572, respectively, of these warrants were
    outstanding.
 
    In connection with the January 2004 private placement, the
    Company issued warrants (the Callable Warrants) to
    purchase 8,094,829 shares of common stock at an exercise
    price of $1.75 per share, as amended. These warrants are
    exercisable until January 28, 2009 and are callable by the
    Company under certain conditions. In December 2004, the Company
    called the first tranche of the Callable Warrants and holders of
    the Callable Warrants exercised warrants to purchase
    1,571,682 shares of common stock at $1.75 per share, or
    approximately $2.7 million in net proceeds. In August 2006,
    the Company called the second tranche of the Callable Warrants
    and holders of the Callable Warrants exercised warrants to
    purchase 2,204,188 shares of common stock at $1.75 per
    share, or approximately $3.9 million in net proceeds. As of
    December 31, 2008 and 2007, 1,302,941 and 1,634,143,
    respectively, of the Callable Warrants were outstanding. In
    January 2009, holders of the Callable Warrants exercised
    
    F-15
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    warrants to purchase 1,264,866 shares of the common stock
    for an aggregate of $2.2 million in proceeds. The remaining
    Callable Warrants to purchase 38,075 shares of common stock
    expired on January 28, 2009.
 
    In October 2003, in conjunction with the issuance of the
    Companys Series C Convertible Preferred Stock (the
    Series C), the Company granted warrants to
    purchase 2,367,114 shares of common stock to purchasers of
    the Series C at an exercise price of $0.7667 per share.
    These warrants expired on October 15, 2008. As of
    December 31, 2008 and 2007, 0 and 1,194,315, respectively,
    of these warrants were outstanding.
 
    |  |  | 
    | 8. | Equity
    Incentive Plans | 
 
    The Company currently has six equity incentive plans (the
    Plans): the 2008 Stock Plan, the 2008 Outside
    Directors Stock Plan, the 2006 Stock Plan, the 2005
    Outside Directors Stock Plan, the 2004 Stock Plan and the
    2001 Stock Plan. All of the Plans were approved by the
    stockholders. In May 2008, the Companys stockholders
    approved the Companys 2008 Stock Plan, which provides for
    the grant of up to a total of 5,000,000 shares of common
    stock (subject to certain limitations as described in the 2008
    Stock Plan) to selected employees, consultants and non-employee
    members of the Companys Board of Directors (Outside
    Directors) as stock options, stock appreciation rights,
    restricted stock awards, restricted stock unit awards and
    performance awards. Also in May 2008, the Companys
    stockholders approved the Companys 2008 Outside
    Directors Stock Plan, which provides for grants of
    restricted stock awards up to a total of 600,000 shares of
    common stock to the Companys Outside Directors.
 
    During the year ended December 31, 2008, the Company
    granted share-based awards under the 2008 Stock Plan, the 2006
    Stock Plan and the 2005 Outside Directors Stock Plan. The
    Company had an aggregate of 18,225,000 shares of common
    stock reserved for issuance as of December 31, 2008. Of
    those shares, 7,254,785 shares were subject to outstanding
    options and 5,413,554 shares were available for future
    grants of share-based awards. At the present time, management
    intends to issue new common shares upon the exercise of stock
    options and restricted stock awards.
 
    Stock Options.  Options are subject to terms
    and conditions established by the Compensation Committee of the
    Companys Board of Directors. Options have a term of ten
    years and generally vest at the rate of 25% one year from the
    grant date and monthly thereafter until the options are fully
    vested over four years. Certain option awards provide for
    accelerated vesting if there is a change in control (as defined
    in the Plans).
    
    F-16
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    A summary of the Companys stock option award activity as
    of and for the years ended December 31, 2008, 2007 and 2006
    is as follows:
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | Shares 
 |  |  | Weighted 
 |  |  | Weighted 
 |  |  | Aggregate 
 |  | 
|  |  | Underlying 
 |  |  | Average Exercise 
 |  |  | Average Remaining 
 |  |  | Intrinsic 
 |  | 
|  |  | Stock Options |  |  | Price per Share |  |  | Contractual Term (yrs) |  |  | Value |  | 
|  | 
| 
    Outstanding at January 1, 2006
 |  |  | 8,535,751 |  |  | $ | 1.01 |  |  |  |  |  |  |  |  |  | 
| 
    Granted
 |  |  | 577,682 |  |  | $ | 2.64 |  |  |  |  |  |  |  |  |  | 
| 
    Exercised
 |  |  | (196,150 | ) |  | $ | 0.80 |  |  |  |  |  |  |  |  |  | 
| 
    Cancelled/forfeited
 |  |  | (279,961 | ) |  | $ | 1.20 |  |  |  |  |  |  |  |  |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Outstanding at December 31, 2006
 |  |  | 8,637,322 |  |  | $ | 1.12 |  |  |  |  |  |  |  |  |  | 
| 
    Granted
 |  |  | 1,029,881 |  |  | $ | 8.08 |  |  |  |  |  |  |  |  |  | 
| 
    Exercised
 |  |  | (1,732,567 | ) |  | $ | 1.11 |  |  |  |  |  |  |  |  |  | 
| 
    Cancelled/forfeited
 |  |  | (124,657 | ) |  | $ | 1.81 |  |  |  |  |  |  |  |  |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Outstanding at December 31, 2007
 |  |  | 7,809,979 |  |  | $ | 2.03 |  |  |  |  |  |  |  |  |  | 
| 
    Granted
 |  |  | 1,513,650 |  |  | $ | 5.76 |  |  |  |  |  |  |  |  |  | 
| 
    Exercised
 |  |  | (1,857,478 | ) |  | $ | 0.55 |  |  |  |  |  |  |  |  |  | 
| 
    Cancelled/forfeited
 |  |  | (211,366 | ) |  | $ | 7.60 |  |  |  |  |  |  |  |  |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Outstanding at December 31, 2008
 |  |  | 7,254,785 |  |  | $ | 3.02 |  |  |  | 6.5 |  |  | $ | 21.5 million |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Vested and expected to vest at December 31, 2008
 |  |  | 6,969,104 |  |  | $ | 2.90 |  |  |  | 6.4 |  |  | $ | 21.4 million |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
| 
    Exercisable at December 31, 2008
 |  |  | 5,043,244 |  |  | $ | 1.80 |  |  |  | 5.5 |  |  | $ | 20.2 million |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
 
    The weighted average grant-date fair values of options granted
    during the years ended December 31, 2008, 2007 and 2006
    were $3.39 per share, $4.94 per share and $1.57 per share,
    respectively. As of December 31, 2008, approximately
    $6.1 million of total unrecognized compensation costs
    related to non-vested stock option awards is expected to be
    recognized over a weighted average period of approximately
    2.8 years. The intrinsic value of options exercised during
    the years ended December 31, 2008, 2007 and 2006 was
    approximately $9.9 million, $13.5 million and
    $342,000, respectively. Cash received from stock option
    exercises for the years ended December 31, 2008, 2007 and
    2006 was approximately $844,000, $1.7 million and $156,000,
    respectively.
 
    The fair value of each option award is estimated on the date of
    grant using a Black-Scholes-Merton option pricing model
    (Black-Scholes model) that uses the assumptions
    noted in the following table. Expected volatility is based on
    historical volatility of the Companys common stock and its
    peer group. The expected term of options granted is based on
    analyses of historical employee termination rates and option
    exercises. The risk-free interest rate is based on the
    U.S. Treasury yield for a period consistent with the
    expected term of the option in effect at the time of the grant.
    The dividend yield assumption is based on the expectation of no
    future dividend payments by the Company. Assumptions used in the
    Black-Scholes model were as follows:
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | Years Ended December 31, |  | 
|  |  | 2008 |  |  | 2007 |  |  | 2006 |  | 
|  | 
| 
    Expected volatility
 |  |  | 65.0 | % |  |  | 70.0 | % |  |  | 75.0 | % | 
| 
    Average expected term (in years)
 |  |  | 5.5 |  |  |  | 5.0 |  |  |  | 4.0 |  | 
| 
    Risk-free interest rate
 |  |  | 1.26-3.14 | % |  |  | 3.5-4.7 | % |  |  | 4.6-5.1 | % | 
| 
    Expected dividend yield
 |  |  | 0 | % |  |  | 0 | % |  |  | 0 | % | 
    
    F-17
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    The following table summarizes information for outstanding and
    exercisable options as of December 31, 2008:
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | Options Outstanding |  |  | Options Exercisable |  | 
|  |  |  |  |  | Weighted Average 
 |  |  | Weighted 
 |  |  |  |  |  | Weighted 
 |  | 
|  |  |  |  |  | Remaining 
 |  |  | Average 
 |  |  | Number 
 |  |  | Average 
 |  | 
|  |  | Number 
 |  |  | Contractual 
 |  |  | Exercise 
 |  |  | Vested and 
 |  |  | Exercise 
 |  | 
| 
    Exercise Price
 |  | Outstanding |  |  | Life in Years |  |  | Price |  |  | Exercisable |  |  | Price |  | 
|  | 
| 
    $0.06 - $ 0.39
 |  |  | 2,499,027 |  |  |  | 4.8 |  |  | $ | 0.39 |  |  |  | 2,499,027 |  |  | $ | 0.39 |  | 
| 
    $0.40 - $ 2.05
 |  |  | 1,608,080 |  |  |  | 5.4 |  |  | $ | 1.95 |  |  |  | 1,540,695 |  |  | $ | 1.94 |  | 
| 
    $2.06 - $ 5.60
 |  |  | 1,872,082 |  |  |  | 8.0 |  |  | $ | 4.22 |  |  |  | 630,582 |  |  | $ | 3.16 |  | 
| 
    $5.61 - $10.37
 |  |  | 1,275,596 |  |  |  | 8.8 |  |  | $ | 7.78 |  |  |  | 372,940 |  |  | $ | 8.40 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  |  | 7,254,785 |  |  |  | 6.5 |  |  | $ | 3.02 |  |  |  | 5,043,244 |  |  | $ | 1.80 |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
 
    Restricted stock awards.  Restricted stock
    awards are grants that entitle the holder to acquire shares of
    restricted common stock at a fixed price, which is typically
    nominal. The shares of restricted stock cannot be sold, pledged,
    or otherwise disposed of until the award vests and any unvested
    shares may be reacquired by the Company for the original
    purchase price following the awardees termination of
    service. Annual grants of restricted stock under the Outside
    Directors Stock Plans typically vest in full the first day
    the awardee may trade the Companys stock in compliance
    with the Companys insider trading policy following the
    date immediately preceding the first annual meeting of
    stockholders following the grant date.
 
    In May 2008, the Company granted certain employees 87,500
    performance-based restricted stock awards (Performance
    Awards), for a purchase price of $0.001 per share, under
    the 2008 Stock Plan. The Performance Awards will become fully
    vested only if certain development performance milestone
    criteria are successfully achieved before October 1, 2009
    (Performance Goal). If the Performance Goal is not
    met, the Performance Awards will be terminated and the Company
    will automatically reacquire the unvested shares for the
    original purchase price. The Company recognized $201,000 of
    share-based compensation expense related to the Performance
    Awards during the year ended December 31, 2008 as
    management believes achievement of the Performance Goal is
    probable at December 31, 2008.
 
    During the years ended December 31, 2008, 2007 and 2006,
    the Company issued 192,500, 105,000 and 90,000 restricted stock
    awards, respectively, under the 2008 Stock Plan and 2005 Outside
    Directors Stock Plan. The following table summarizes the
    Companys unvested restricted stock activity during the
    years ended December 31, 2008, 2007 and 2006:
 
    |  |  |  |  |  |  |  |  |  | 
|  |  |  |  |  | Weighted Average 
 |  | 
|  |  | Number of 
 |  |  | Grant Date 
 |  | 
|  |  | Shares |  |  | Fair Value |  | 
|  | 
| 
    Unvested at January 1, 2006
 |  |  |  |  |  | $ |  |  | 
| 
    Granted
 |  |  | 90,000 |  |  | $ | 2.72 |  | 
| 
    Vested
 |  |  |  |  |  | $ |  |  | 
| 
    Forfeited
 |  |  |  |  |  | $ |  |  | 
|  |  |  |  |  |  |  |  |  | 
| 
    Unvested at December 31, 2006
 |  |  | 90,000 |  |  | $ | 2.72 |  | 
| 
    Granted
 |  |  | 105,000 |  |  | $ | 10.37 |  | 
| 
    Vested
 |  |  | (90,000 | ) |  | $ | 2.72 |  | 
| 
    Forfeited
 |  |  |  |  |  | $ |  |  | 
|  |  |  |  |  |  |  |  |  | 
| 
    Unvested at December 31, 2007
 |  |  | 105,000 |  |  | $ | 10.37 |  | 
| 
    Granted
 |  |  | 192,500 |  |  | $ | 4.94 |  | 
| 
    Vested
 |  |  | (105,000 | ) |  | $ | 10.37 |  | 
| 
    Forfeited
 |  |  |  |  |  | $ |  |  | 
|  |  |  |  |  |  |  |  |  | 
| 
    Unvested at December 31, 2008
 |  |  | 192,500 |  |  | $ | 4.94 |  | 
|  |  |  |  |  |  |  |  |  | 
    
    F-18
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    The total grant-date fair value of restricted stock awards
    vested during the years ended December 31, 2008 and 2007
    was $1.1 million and $245,000, respectively. As of
    December 31, 2008, total unrecognized compensation cost
    related to unvested shares was $420,000, which is expected to be
    recognized over a weighted-average period of 6.5 months.
 
    |  |  | 
    | 9. | Commitments
    and Contingencies | 
 
    Operating Leases  The Companys
    administrative offices and research facilities are located in
    San Diego, California. The Company leases an aggregate of
    approximately 51,500 square feet of office and research
    space.
 
    In July 2007, the Company entered into a sublease agreement with
    Avanir Pharmaceuticals, Inc. (Avanir) for
    Avanirs excess leased facilities located at 11388 Sorrento
    Valley Road, San Diego, California (the 11388
    Sublease) for 27,575 square feet of office and
    research space. The 11388 Sublease expired in August 2008. As a
    result, in July 2007, the Company entered into a lease agreement
    (the Lease) with BC Sorrento, LLC (BC
    Sorrento) for these facilities through January 2013.
    Payment obligations under the Lease commenced in September 2008
    after the obligations in the short-term 11388 Sublease had
    concluded. Under the terms of the Lease, the initial monthly
    rent payment was approximately $37,000 net of costs and
    property taxes associated with the operation and maintenance of
    the leased facilities, commencing in September 2008 and will
    increase to approximately $73,000 starting in March 2009.
    Thereafter, the annual base rent is subject to approximately 4%
    annual increases each year throughout the term of the Lease.
    Under terms of the Lease and 11388 Sublease, the Company
    received an allowance for the cost of tenant improvements
    totaling approximately $276,000 and received free rent totaling
    approximately $794,000, of which approximately $870,000 and
    $625,000 was included in deferred rent as of December 31,
    2008 and 2007, respectively. The difference between the actual
    amount paid and the amount recorded as rent expense in each
    fiscal year has been recorded as an adjustment to deferred rent.
 
    In July 2007, the Company also entered into a sublease agreement
    with Avanir for Avanirs excess leased facilities located
    at 11404 Sorrento Valley Road, San Diego, California (the
    11404 Sublease) for 21,184 square feet of
    office and research space for a monthly rent payment of
    approximately $54,000, net of costs and property taxes
    associated with the operation and maintenance of the subleased
    facilities. The 11404 Sublease expires in January 2013. The
    annual base rent is subject to approximately 4% annual increases
    each year throughout the terms of the 11404 Sublease. In
    addition, the Company received free rent totaling approximately
    $492,000, of which approximately $418,000 and $299,000 was
    included in deferred rent as of December 31, 2008 and 2007,
    respectively. The difference between the actual amount paid and
    the amount recorded as rent expense in each fiscal year has been
    recorded as an adjustment to deferred rent. The Company pays a
    pro rata share of operating costs, insurance costs, costs of
    utilities and real property taxes incurred by Avanir for the
    subleased facilities.
 
    Subsequent to December 31, 2008, the Company entered into a
    sub-sublease
    agreement with Sirion Therapeutics, Inc. (Sirion), a
    subtenant of Avanir, for Sirions excess subleased
    facilities located at 11408 Sorrento Valley Road,
    San Diego, California (the
    Sub-Sublease)
    for 2,700 square feet of office and research space for a
    monthly rent payment of approximately $6,000. Payment
    obligations under the
    Sub-Sublease
    will commence after certain tenant improvements to these
    facilities are completed, which is expected to occur in April
    2009.
 
    Additionally, the Company leases certain office equipment under
    operating leases. Total rent expense was approximately
    $1.4 million, $1.1 million and $297,000 for the years
    ended December 31, 2008, 2007 and 2006, respectively.
    
    F-19
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    Approximate annual future minimum operating lease payments as of
    December 31, 2008 are as follows:
 
    |  |  |  |  |  | 
|  |  | Operating 
 |  | 
| 
    Year:
 |  | Leases |  | 
|  | 
| 
    2009
 |  | $ | 1,490,000 |  | 
| 
    2010
 |  |  | 1,615,000 |  | 
| 
    2011
 |  |  | 1,665,000 |  | 
| 
    2012
 |  |  | 1,729,000 |  | 
| 
    2013
 |  |  | 67,000 |  | 
| 
    Thereafter
 |  |  |  |  | 
|  |  |  |  |  | 
| 
    Total minimum lease payments
 |  | $ | 6,566,000 |  | 
|  |  |  |  |  | 
 
    Material Agreements  In September 2007, the
    Company entered into the Gammagard Partnership with Baxter.
    Under the terms of the Gammagard Partnership, Baxter obtained a
    worldwide, exclusive license to develop and commercialize
    product combinations of rHuPH20, with a current Baxter product,
    GAMMAGARD LIQUID. Under the terms of the Gammagard Partnership,
    Baxter paid the Company a nonrefundable upfront payment of
    $10.0 million. Due to the Companys continuing
    involvement obligations, the $10 million upfront payment
    was deferred and is being recognized over the term of the
    Gammagard Partnership.
 
    Pending successful completion of a series of regulatory and
    sales milestones, Baxter may make further milestone payments
    totaling $37.0 million to us. In addition, Baxter will pay
    royalties on the sales, if any, of the products that result from
    the collaboration. The Gammagard Partnership is applicable to
    both kit and formulation combinations. Baxter will assume all
    development, manufacturing, clinical, regulatory, sales and
    marketing costs under the Gammagard Partnership, while the
    Company will be responsible for the supply of the rHuPH20
    enzyme. In addition, Baxter has certain product development and
    commercialization obligations in major markets identified in the
    Gammagard Partnership.
 
    In February 2007, the Company and Baxter amended certain
    existing agreements relating to HYLENEX and entered into the
    HYLENEX Partnership, a new agreement for kits and formulations
    with rHuPH20. Under the terms of the HYLENEX Partnership, Baxter
    paid a nonrefundable upfront payment of $10.0 million and,
    pending the successful completion of a series of regulatory and
    sales events, Baxter will make milestone payments to us which
    could potentially reach a value of up to $25.0 million. In
    addition, Baxter will make payments to the Company based on the
    sales of products covered under the HYLENEX Partnership. Through
    December 31, 2008, Baxter prepaid a total of
    $4.5 million of such product-based payments. In January
    2009, Baxter prepaid another $5.5 million of such
    product-based payments. Baxter will also now assume all
    development, manufacturing, clinical, regulatory, sales and
    marketing costs of the products covered by the HYLENEX
    Partnership. The Company will continue to supply Baxter with the
    API for HYLENEX, and Baxter will fill and finish HYLENEX and
    hold it for subsequent distribution. In addition, Baxter will
    obtain a worldwide, exclusive license to develop and
    commercialize product combinations of rHuPH20 with Baxter
    hydration fluids and generic small molecule drugs, with the
    exception of combinations with (i) bisphosphonates,
    (ii) cytostatic and (iii) cytotoxic chemotherapeutic
    agents, the rights to which have been retained by the Company.
    Additionally, Baxter will make product-based payments on the
    sales, if any, of the products that result from the
    collaboration. Due to the Companys continuing involvement
    obligations, the $10.0 million upfront payment was deferred
    and is being recognized over the term of the HYLENEX Partnership.
 
    In December 2006, the Company and Roche entered into the Roche
    Partnership for Enhanze Technology. Under the terms of the Roche
    Partnership, Roche obtained a worldwide, exclusive license to
    develop and commercialize product combinations of rHuPH20 and up
    to thirteen Roche target compounds resulting from the
    partnership. Roche paid $20.0 million as an initial upfront
    license fee for the application of rHuPH20 to three pre-defined
    Roche biologic targets. Pending the successful completion of a
    series of clinical, regulatory and sales
    
    F-20
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    events, Roche will pay the Company further milestones which
    could potentially reach a value of up to $111.0 million. In
    addition, Roche will pay the Company royalties on product sales
    for these first three targets. Through December 2016, Roche will
    also have the option to exclusively develop and commercialize
    rHuPH20 with an additional ten targets to be identified by
    Roche, provided that Roche will be obligated to pay continuing
    exclusivity maintenance fees to the Company in order to maintain
    its exclusive development rights for these targets. For each of
    the additional ten targets, Roche may pay the Company further
    upfront and milestone payments of up to $47.0 million per
    target, as well as royalties on product sales for each of these
    additional ten targets. Additionally, Roche will obtain access
    to the Companys expertise in developing and applying
    rHuPH20 to Roche targets. Under the terms of the Roche
    Partnership, the Company was obligated to scale up the
    production of rHuPH20 and to identify a second source
    manufacturer that would help meet anticipated production
    obligations arising from the partnership. To that end, during
    2008, the Company entered into a Technology Transfer Agreement
    and a Clinical Supply Agreement with a second rHuPH20
    manufacturer. This manufacturer has the capacity to produce the
    quantities the Company was required to deliver under the terms
    of the Roche Partnership. The technology transfer was completed
    in 2008 with
    scale-up and
    clinical supply manufacturing planned for 2009.
 
    In August 2008, the Company entered into a Clinical Supply
    Agreement (the Cook Agreement) with Cook Pharmica
    LLC (Cook). Under the terms of the Cook Agreement,
    Cook will manufacture certain batches of the API that will be
    used in clinical trials of certain product candidates.
 
    In December 2006, the Company amended its Commercial Supply
    Agreement (the Amendment) with Avid Bioservices,
    Inc. (Avid) which was originally entered into in
    February 2005. Under the terms of the Amendment, the Company is
    committed to certain minimum annual purchases of API equal to
    two quarters of forecasted supply. In addition, Avid has the
    right to manufacture and supply a certain percentage of the API
    that will be used in the Companys HYLENEX and Cumulase
    products. At December 31, 2008, the Company has a minimum
    purchase obligation of approximately $1.0 million.
 
    Legal Contingencies  From time to time
    the Company is involved in legal actions arising in the normal
    course of its business. The Company is not presently subject to
    any material litigation nor, to managements knowledge, is
    any litigation threatened against the Company that collectively
    is expected to have a material adverse effect on the
    Companys consolidated cash flows, financial condition or
    results of operations.
 
 
    Significant components of the Companys net deferred tax
    assets at December 31, 2008 and 2007 are shown below. A
    valuation allowance of $49.6 million and $28.6 million
    has been established to offset the net deferred tax assets as of
    December 31, 2008 and 2007, respectively, as realization of
    such assets is uncertain.
 
    |  |  |  |  |  |  |  |  |  | 
|  |  | 2008 |  |  | 2007 |  | 
|  | 
| 
    Deferred tax assets:
 |  |  |  |  |  |  |  |  | 
| 
    Net operating loss carryforwards
 |  | $ | 25,466,000 |  |  | $ | 15,303,000 |  | 
| 
    Deferred revenue
 |  |  | 14,566,000 |  |  |  | 7,639,000 |  | 
| 
    Research and development credits
 |  |  | 7,775,000 |  |  |  | 4,321,000 |  | 
| 
    Share-based compensation
 |  |  | 929,000 |  |  |  | 696,000 |  | 
| 
    Depreciation
 |  |  | 80,000 |  |  |  | 95,000 |  | 
| 
    Other, net
 |  |  | 743,000 |  |  |  | 505,000 |  | 
|  |  |  |  |  |  |  |  |  | 
| 
    Total deferred tax assets
 |  |  | 49,559,000 |  |  |  | 28,559,000 |  | 
| 
    Valuation allowance for deferred tax assets
 |  |  | (49,559,000 | ) |  |  | (28,559,000 | ) | 
|  |  |  |  |  |  |  |  |  | 
| 
    Net deferred tax assets
 |  | $ |  |  |  | $ |  |  | 
|  |  |  |  |  |  |  |  |  | 
    
    F-21
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    The provision for income taxes on earnings subject to income
    taxes differs from the statutory federal income tax rate at
    December 31, 2008, 2007 and 2006, due to the following:
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | 2008 |  |  | 2007 |  |  | 2006 |  | 
|  | 
| 
    Federal income tax rate of 34%
 |  | $ | (16,544,000 | ) |  | $ | (8,125,000 | ) |  | $ | (5,016,000 | ) | 
| 
    State income tax, net of federal benefit
 |  |  | (2,839,000 | ) |  |  | (1,394,000 | ) |  |  | (861,000 | ) | 
| 
    Research and development credits
 |  |  | (3,099,000 | ) |  |  | (2,133,000 | ) |  |  | (615,000 | ) | 
| 
    Tax effect on non-deductible expenses and other
 |  |  | 2,445,000 |  |  |  | 857,000 |  |  |  | 286,000 |  | 
| 
    Increase in valuation allowance
 |  |  | 20,037,000 |  |  |  | 10,795,000 |  |  |  | 6,206,000 |  | 
| 
    Benefit due to refundable R&D credit
 |  |  | (63,000 | ) |  |  |  |  |  |  |  |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | $ | (63,000 | ) |  | $ |  |  |  | $ |  |  | 
|  |  |  |  |  |  |  |  |  |  |  |  |  | 
 
    At December 31, 2008, the Company had federal and
    California tax net operating loss carryforwards of approximately
    $77.5 million and $79.8 million, respectively.
    Included in these amounts are federal and California net
    operating losses of approximately $13.9 million
    attributable to stock option deductions of which the tax benefit
    will be credited to equity when realized. The federal and
    California tax loss carryforwards will begin to expire in 2018
    and 2012, respectively, unless previously utilized.
 
    At December 31, 2008, the Company also had federal and
    California research and development tax credit carryforwards of
    approximately $5.6 million and $3.3 million,
    respectively. The federal research and development tax credits
    will begin to expire in 2024 unless previously utilized. The
    California research and development tax credits will
    carryforward indefinitely until utilized.
 
    Pursuant to Internal Revenue Code Section 382, the annual
    use of the net operating loss carryforwards and research and
    development tax credits could be limited by any greater than 50%
    ownership change during any three-year testing period. As a
    result of any such ownership change, portions of the
    Companys net operating loss carryforwards and research and
    development tax credits are subject to annual limitations. The
    Company completed a Section 382 analysis regarding the
    limitation of the net operating losses and research and
    development credits. Based upon the analysis, the Company
    determined that ownership changes occurred in prior years.
    However, the annual limitations on net operating loss and
    research and development tax credit carryforwards will not have
    a material impact on the future utilization of such
    carryforwards.
 
    The Company adopted the provisions of FIN 48 on
    January 1, 2007. The adoption of FIN 48 did not impact
    the Companys consolidated financial position or results of
    operations. At the date of adoption and at December 31,
    2008, the Companys unrecognized income tax benefits and
    uncertain tax provisions were not material and would not, if
    recognized, affect the effective tax rate.
 
    Interest
    and/or
    penalties related to uncertain income tax positions are
    recognized by the Company as a component of income tax expense.
    For the years ended December 31, 2008 and 2007, the Company
    did not recognize any interest or penalties.
 
    The Company is subject to taxation in the U.S. and in
    various state jurisdictions. The Companys tax years for
    1998 and forward are subject to examination by the U.S. and
    California tax authorities due to the carryforward of unutilized
    net operating losses and research and development credits.
 
    |  |  | 
    | 11. | Related
    Party Transactions | 
 
    In July 2007, the Company entered into the 11388 Sublease with
    Avanir for Avanirs excess leased facilities in
    San Diego, California. The 11388 Sublease expired in August
    2008. As a result, in July 2007, the Company entered into the
    Lease with BC Sorrento for these facilities through January
    2013. Connie L. Matsui, a director of the Company, and her
    husband have a controlling ownership interest in an entity that
    holds a minority ownership position in BC Sorrento. In addition,
    this entity currently serves as the managing member of BC
    Sorrento. The
    
    F-22
 
 
    Halozyme
    Therapeutics, Inc.
    
 
    Notes to
    Consolidated Financial
    Statements  (Continued)
 
    transaction with BC Sorrento was reviewed and approved by the
    Companys Board of Directors in accordance with the
    Companys related party transaction policy. The Lease
    commenced in September 2008. The Company paid BC Sorrento
    approximately $281,000 and $0 for the years ended
    December 31, 2008 and 2007, respectively.
 
    In December 2006, Halozyme entered into a license agreement with
    a related party, Nektar Therapeutics AL, Corporation
    (Nektar) under which the Company obtained a license
    to certain intellectual property rights and proprietary
    technology of Nektar. Nektars co-founder, Chief Scientific
    Officer and Director, Dr. John Patton, is currently a
    member of the Companys Board of Directors. Dr. Patton
    recused himself from the segments of the various Board of
    Directors meetings at which this transaction was discussed,
    evaluated or approved. The Company paid Nektar approximately
    $73,000 and $75,000 for the years ended December 31, 2008
    and 2007. Under the terms of this agreement, the Company is
    obligated to make certain payments in the future upon achieving
    certain specified milestones and royalties on product sales.
 
    |  |  | 
    | 12. | Summary
    of Unaudited Quarterly Financial Information | 
 
    The following is a summary of the Companys unaudited
    quarterly statement of operations data derived from unaudited
    consolidated financial statements included in the Quarterly
    Reports on
    Form 10-Q:
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | Quarters Ended |  | 
| 
    2008 (Unaudited):
 |  | March 31, |  |  | June 30, |  |  | September 30, |  |  | December 31, |  | 
|  | 
| 
    Total revenues
 |  | $ | 1,805,518 |  |  | $ | 1,434,219 |  |  | $ | 2,462,226 |  |  | $ | 3,062,176 |  | 
| 
    Total operating expenses
 |  | $ | 12,638,984 |  |  | $ | 12,808,789 |  |  | $ | 13,661,945 |  |  | $ | 20,089,123 |  | 
| 
    Net loss
 |  | $ | (9,953,997 | ) |  | $ | (11,002,390 | ) |  | $ | (10,872,158 | ) |  | $ | (16,825,654 | ) | 
| 
    Net loss per share, basic and diluted
 |  | $ | (0.13 | ) |  | $ | (0.14 | ) |  | $ | (0.14 | ) |  | $ | (0.21 | ) | 
| 
    Shares used in computing net loss per share, basic and diluted
 |  |  | 78,300,319 |  |  |  | 79,454,496 |  |  |  | 80,293,800 |  |  |  | 81,213,985 |  | 
 
    |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 
|  |  | Quarters Ended |  | 
| 
    2007 (Unaudited):
 |  | March 31, |  |  | June 30, |  |  | September 30, |  |  | December 31, |  | 
|  | 
| 
    Total revenues
 |  | $ | 810,215 |  |  | $ | 708,516 |  |  | $ | 942,881 |  |  | $ | 1,337,909 |  | 
| 
    Total operating expenses
 |  | $ | 4,890,626 |  |  | $ | 6,542,830 |  |  | $ | 9,252,533 |  |  | $ | 11,263,739 |  | 
| 
    Net loss
 |  | $ | (3,357,304 | ) |  | $ | (4,801,707 | ) |  | $ | (7,028,781 | ) |  | $ | (8,708,391 | ) | 
| 
    Net loss per share, basic and diluted
 |  | $ | (0.05 | ) |  | $ | (0.07 | ) |  | $ | (0.09 | ) |  | $ | (0.11 | ) | 
| 
    Shares used in computing net loss per share, basic and diluted
 |  |  | 69,984,931 |  |  |  | 73,217,967 |  |  |  | 76,502,867 |  |  |  | 77,459,803 |  | 
    
    F-23
 
